miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 223342 0.68 0.541885
Target:  5'- cGGCGGCGc-CGCuaccGGUGCCGucgucucuCCUCCGa -3'
miRNA:   3'- -CCGUCGCcaGCGu---CCGCGGC--------GGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 222623 0.67 0.619733
Target:  5'- cGCGGCcgacaugugaucgaaGGgccgGCAGGCGCgcagCGCCUCCa -3'
miRNA:   3'- cCGUCG---------------CCag--CGUCCGCG----GCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 222108 0.7 0.453976
Target:  5'- cGGCAGCGucUCG-AGGCGCUGCg-CCGg -3'
miRNA:   3'- -CCGUCGCc-AGCgUCCGCGGCGgaGGC- -5'
14644 5' -64.3 NC_003521.1 + 221898 0.66 0.690689
Target:  5'- gGGCGGauugcCGG-CGCGcGGCGCCacCCUUCGg -3'
miRNA:   3'- -CCGUC-----GCCaGCGU-CCGCGGc-GGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 219792 0.71 0.366965
Target:  5'- aGCGGUGGaucUCGCcguGGCGuuacCCGCCUCCa -3'
miRNA:   3'- cCGUCGCC---AGCGu--CCGC----GGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 219151 0.74 0.245577
Target:  5'- aGGCAG-GGUaccaGCAGGCGCCGCagcguguUCCa -3'
miRNA:   3'- -CCGUCgCCAg---CGUCCGCGGCGg------AGGc -5'
14644 5' -64.3 NC_003521.1 + 218631 0.66 0.644093
Target:  5'- cGCGGCGGUaagcggccacgGCcGGCGgCGCCUCg- -3'
miRNA:   3'- cCGUCGCCAg----------CGuCCGCgGCGGAGgc -5'
14644 5' -64.3 NC_003521.1 + 218089 0.66 0.653453
Target:  5'- aGGCGGCGG-CGCcggugacgaugaGGGCGUagaGCCcgCUGu -3'
miRNA:   3'- -CCGUCGCCaGCG------------UCCGCGg--CGGa-GGC- -5'
14644 5' -64.3 NC_003521.1 + 216920 0.66 0.6628
Target:  5'- uGGCAGCGGagGCGGucgaccccauacGCuGuuGCC-CCGg -3'
miRNA:   3'- -CCGUCGCCagCGUC------------CG-CggCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 216675 0.69 0.497059
Target:  5'- cGCGGUGGUCGCGGcGaCGUuauaggcacgaaCGCCcUCCGa -3'
miRNA:   3'- cCGUCGCCAGCGUC-C-GCG------------GCGG-AGGC- -5'
14644 5' -64.3 NC_003521.1 + 216616 0.67 0.597292
Target:  5'- aGCAGCaGUCgacgguagGCGGGCGC-GCCgacgCCGg -3'
miRNA:   3'- cCGUCGcCAG--------CGUCCGCGgCGGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 213949 0.66 0.644093
Target:  5'- aGGCAgagacGCGG--GUGGGCGCCGgCUCgGg -3'
miRNA:   3'- -CCGU-----CGCCagCGUCCGCGGCgGAGgC- -5'
14644 5' -64.3 NC_003521.1 + 212647 0.66 0.689764
Target:  5'- uGGCcauGCGacccgaagagggcGUCGCGGGCauggucGCCGCCgucgCCa -3'
miRNA:   3'- -CCGu--CGC-------------CAGCGUCCG------CGGCGGa---GGc -5'
14644 5' -64.3 NC_003521.1 + 212495 0.68 0.532801
Target:  5'- cGGCcaccGGCGGUcCGCAGGCcgcgccgggGUCGCUgCCGc -3'
miRNA:   3'- -CCG----UCGCCA-GCGUCCG---------CGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 212231 0.72 0.324584
Target:  5'- uGGUGGCGGUgCGCAGcaGC-CCGCCgUCCGc -3'
miRNA:   3'- -CCGUCGCCA-GCGUC--CGcGGCGG-AGGC- -5'
14644 5' -64.3 NC_003521.1 + 212072 0.67 0.634724
Target:  5'- gGGCGGUGG-CGCGGccCGCgCGCgUCUGg -3'
miRNA:   3'- -CCGUCGCCaGCGUCc-GCG-GCGgAGGC- -5'
14644 5' -64.3 NC_003521.1 + 211987 0.68 0.560199
Target:  5'- cGCAGCucGUCGUccAGGCGCCGCagacacgCCa -3'
miRNA:   3'- cCGUCGc-CAGCG--UCCGCGGCGga-----GGc -5'
14644 5' -64.3 NC_003521.1 + 211457 0.66 0.653453
Target:  5'- gGGUAccGCGGcCGCGGGU-UCGCaCUCCGu -3'
miRNA:   3'- -CCGU--CGCCaGCGUCCGcGGCG-GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 211381 0.67 0.587973
Target:  5'- cGUAGUaGGcCGuCAGGCGCCGgCUCuCGu -3'
miRNA:   3'- cCGUCG-CCaGC-GUCCGCGGCgGAG-GC- -5'
14644 5' -64.3 NC_003521.1 + 209089 0.72 0.352424
Target:  5'- aGGCGGCGGaggCGguGGcCGCgGCgUCCc -3'
miRNA:   3'- -CCGUCGCCa--GCguCC-GCGgCGgAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.