miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 240461 1.1 0.000825
Target:  5'- gGGCAGCGGUCGCAGGCGCCGCCUCCGg -3'
miRNA:   3'- -CCGUCGCCAGCGUCCGCGGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 240038 0.72 0.359643
Target:  5'- gGGCgccgGGCGGUccucCGCcgauGGCGCCugcuugGCCUCCGg -3'
miRNA:   3'- -CCG----UCGCCA----GCGu---CCGCGG------CGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 239691 0.72 0.359643
Target:  5'- cGGCAGCGGuUCGUGucccGuCGCCGCCUCg- -3'
miRNA:   3'- -CCGUCGCC-AGCGUc---C-GCGGCGGAGgc -5'
14644 5' -64.3 NC_003521.1 + 239459 0.66 0.681424
Target:  5'- gGGaCAGCGGUgGCccgcGGCGCguucaGCCccagCCGg -3'
miRNA:   3'- -CC-GUCGCCAgCGu---CCGCGg----CGGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 239043 0.66 0.653453
Target:  5'- cGGaccUGGUCGC-GGCGCCGUgUUCCGa -3'
miRNA:   3'- -CCgucGCCAGCGuCCGCGGCG-GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 238445 0.68 0.532801
Target:  5'- gGGCAGgaGG-CGCAGG-GCgGCCUCgGc -3'
miRNA:   3'- -CCGUCg-CCaGCGUCCgCGgCGGAGgC- -5'
14644 5' -64.3 NC_003521.1 + 236363 0.69 0.470974
Target:  5'- -uCGGgGGcCGCAGGCGgUGCCUUCa -3'
miRNA:   3'- ccGUCgCCaGCGUCCGCgGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 235285 0.74 0.26804
Target:  5'- uGGCGGCGGcCGCGccGGCuGCCGUCaCCGu -3'
miRNA:   3'- -CCGUCGCCaGCGU--CCG-CGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 234436 0.7 0.445603
Target:  5'- cGCcGCGGUaGCugcGGCGCC-CCUCCGc -3'
miRNA:   3'- cCGuCGCCAgCGu--CCGCGGcGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 234196 0.69 0.462434
Target:  5'- gGGCcaAGCGuUCGC--GCGCgGCCUCCGa -3'
miRNA:   3'- -CCG--UCGCcAGCGucCGCGgCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 234133 0.72 0.324584
Target:  5'- aGCAGCGcUCGCGGGCGCagGCC-CUGc -3'
miRNA:   3'- cCGUCGCcAGCGUCCGCGg-CGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 233056 0.69 0.514804
Target:  5'- aGGCucgucuGCGG-CGUcugcuGGGacugcCGCCGCCUCCGc -3'
miRNA:   3'- -CCGu-----CGCCaGCG-----UCC-----GCGGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 232810 0.7 0.437317
Target:  5'- -cCGGCGGUCuggaGCuacGGCGCUGCC-CCGg -3'
miRNA:   3'- ccGUCGCCAG----CGu--CCGCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 228233 0.69 0.497059
Target:  5'- aGGUAcGCuGGUCGUgguGGGUGCCGCCgugguggUCGg -3'
miRNA:   3'- -CCGU-CG-CCAGCG---UCCGCGGCGGa------GGC- -5'
14644 5' -64.3 NC_003521.1 + 226884 0.67 0.629101
Target:  5'- gGGCAGCuG-CGgGGGCaccacggcggccagcGCgGCCUCCGc -3'
miRNA:   3'- -CCGUCGcCaGCgUCCG---------------CGgCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 226358 0.66 0.644093
Target:  5'- gGGUAGCGc-CGCGGGagcggcggcugaCGCCGCCgcagggCCGu -3'
miRNA:   3'- -CCGUCGCcaGCGUCC------------GCGGCGGa-----GGC- -5'
14644 5' -64.3 NC_003521.1 + 224608 0.68 0.560199
Target:  5'- cGGCcaGGCGGca--GGGCGCCGCCaCCu -3'
miRNA:   3'- -CCG--UCGCCagcgUCCGCGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 224023 0.77 0.174951
Target:  5'- gGGCccGGCGGUCgggGCGGGCGCCGUCgCCc -3'
miRNA:   3'- -CCG--UCGCCAG---CGUCCGCGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 223741 0.74 0.251043
Target:  5'- cGGUGGCGGgaaCGUGGGuCGCCGCCagCGg -3'
miRNA:   3'- -CCGUCGCCa--GCGUCC-GCGGCGGagGC- -5'
14644 5' -64.3 NC_003521.1 + 223363 0.67 0.633787
Target:  5'- cGGCGGCcuuGGUCaGCAGcgacaucGCGgCGCC-CCGa -3'
miRNA:   3'- -CCGUCG---CCAG-CGUC-------CGCgGCGGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.