miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14659 3' -54.4 NC_003525.1 + 17810 1.09 0.001221
Target:  5'- cCAGCAACAGCACCAACAGGACCACCAa -3'
miRNA:   3'- -GUCGUUGUCGUGGUUGUCCUGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 21584 0.78 0.170686
Target:  5'- -cGCGACAGCACCggUacgugaAGGGCUACCGg -3'
miRNA:   3'- guCGUUGUCGUGGuuG------UCCUGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 18673 0.74 0.313284
Target:  5'- gAGCGAUAGCcuuAUCAACGGGuAUCGCCAg -3'
miRNA:   3'- gUCGUUGUCG---UGGUUGUCC-UGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 8391 0.74 0.305534
Target:  5'- aCAGUgcaaaGACGGCaACCAGCAGGGCgGCUg -3'
miRNA:   3'- -GUCG-----UUGUCG-UGGUUGUCCUGgUGGu -5'
14659 3' -54.4 NC_003525.1 + 60035 0.72 0.389648
Target:  5'- aCAGCAGUAGCACCAA-AGGAaaCCAUCAc -3'
miRNA:   3'- -GUCGUUGUCGUGGUUgUCCU--GGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 55809 0.72 0.417673
Target:  5'- aGGgAACAcCGCCAGCAGaGCCACCGa -3'
miRNA:   3'- gUCgUUGUcGUGGUUGUCcUGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 43645 0.72 0.427284
Target:  5'- uCGGCgAACAGCGCCccguguGGCAGGGCaauCCAg -3'
miRNA:   3'- -GUCG-UUGUCGUGG------UUGUCCUGgu-GGU- -5'
14659 3' -54.4 NC_003525.1 + 45847 0.71 0.436045
Target:  5'- gAGCGGCAGCAaguggggaaCAGCAGaagaccuGACCGCCGc -3'
miRNA:   3'- gUCGUUGUCGUg--------GUUGUC-------CUGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 4721 0.7 0.52986
Target:  5'- aAGCAcgaaGCAG-ACCAgcGCGGGugCGCCGg -3'
miRNA:   3'- gUCGU----UGUCgUGGU--UGUCCugGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 3191 0.69 0.551523
Target:  5'- gGGCAcauGCAGCugCAcaACGGGAUaauGCCAg -3'
miRNA:   3'- gUCGU---UGUCGugGU--UGUCCUGg--UGGU- -5'
14659 3' -54.4 NC_003525.1 + 59430 0.68 0.651258
Target:  5'- -uGCAGCAGCGCCAGCGuGAUguugCugCAc -3'
miRNA:   3'- guCGUUGUCGUGGUUGUcCUG----GugGU- -5'
14659 3' -54.4 NC_003525.1 + 61085 0.68 0.625618
Target:  5'- uGGCugaGACAGCACCAAaacuucgugcugacCGGGaaagaaucaacGCCGCCAg -3'
miRNA:   3'- gUCG---UUGUCGUGGUU--------------GUCC-----------UGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 26796 0.68 0.651258
Target:  5'- cCGGCAGCacgGGaCGCCGuCAGGucacccGCCGCCAc -3'
miRNA:   3'- -GUCGUUG---UC-GUGGUuGUCC------UGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 61664 0.68 0.617815
Target:  5'- -cGUAGCGGUGCCAGCGGuGGCUAUa- -3'
miRNA:   3'- guCGUUGUCGUGGUUGUC-CUGGUGgu -5'
14659 3' -54.4 NC_003525.1 + 59387 0.68 0.60668
Target:  5'- aAGCGcaccACAGgcUACCAGCAGGACaauaauCACCAc -3'
miRNA:   3'- gUCGU----UGUC--GUGGUUGUCCUG------GUGGU- -5'
14659 3' -54.4 NC_003525.1 + 17105 0.68 0.640114
Target:  5'- uGGCAuUAGCGCCGGugcCAGGuguuuuagcACCGCCAc -3'
miRNA:   3'- gUCGUuGUCGUGGUU---GUCC---------UGGUGGU- -5'
14659 3' -54.4 NC_003525.1 + 31967 0.67 0.695541
Target:  5'- gGGCAcucCAGCGCCAGCAuGGuCUACa- -3'
miRNA:   3'- gUCGUu--GUCGUGGUUGU-CCuGGUGgu -5'
14659 3' -54.4 NC_003525.1 + 20463 0.67 0.706483
Target:  5'- cCGGCAACcGCACCGAauGGAgCCcCCAu -3'
miRNA:   3'- -GUCGUUGuCGUGGUUguCCU-GGuGGU- -5'
14659 3' -54.4 NC_003525.1 + 9682 0.67 0.706483
Target:  5'- aCAGguGCGGCagGCCcgGugGGGGCgACCGg -3'
miRNA:   3'- -GUCguUGUCG--UGG--UugUCCUGgUGGU- -5'
14659 3' -54.4 NC_003525.1 + 9642 0.67 0.684536
Target:  5'- -uGCGGCAgGC-CCGGCAGGcCCACa- -3'
miRNA:   3'- guCGUUGU-CGuGGUUGUCCuGGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.