Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14659 | 3' | -54.4 | NC_003525.1 | + | 17810 | 1.09 | 0.001221 |
Target: 5'- cCAGCAACAGCACCAACAGGACCACCAa -3' miRNA: 3'- -GUCGUUGUCGUGGUUGUCCUGGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 21584 | 0.78 | 0.170686 |
Target: 5'- -cGCGACAGCACCggUacgugaAGGGCUACCGg -3' miRNA: 3'- guCGUUGUCGUGGuuG------UCCUGGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 8391 | 0.74 | 0.305534 |
Target: 5'- aCAGUgcaaaGACGGCaACCAGCAGGGCgGCUg -3' miRNA: 3'- -GUCG-----UUGUCG-UGGUUGUCCUGgUGGu -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 18673 | 0.74 | 0.313284 |
Target: 5'- gAGCGAUAGCcuuAUCAACGGGuAUCGCCAg -3' miRNA: 3'- gUCGUUGUCG---UGGUUGUCC-UGGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 60035 | 0.72 | 0.389648 |
Target: 5'- aCAGCAGUAGCACCAA-AGGAaaCCAUCAc -3' miRNA: 3'- -GUCGUUGUCGUGGUUgUCCU--GGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 55809 | 0.72 | 0.417673 |
Target: 5'- aGGgAACAcCGCCAGCAGaGCCACCGa -3' miRNA: 3'- gUCgUUGUcGUGGUUGUCcUGGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 43645 | 0.72 | 0.427284 |
Target: 5'- uCGGCgAACAGCGCCccguguGGCAGGGCaauCCAg -3' miRNA: 3'- -GUCG-UUGUCGUGG------UUGUCCUGgu-GGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 45847 | 0.71 | 0.436045 |
Target: 5'- gAGCGGCAGCAaguggggaaCAGCAGaagaccuGACCGCCGc -3' miRNA: 3'- gUCGUUGUCGUg--------GUUGUC-------CUGGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 4721 | 0.7 | 0.52986 |
Target: 5'- aAGCAcgaaGCAG-ACCAgcGCGGGugCGCCGg -3' miRNA: 3'- gUCGU----UGUCgUGGU--UGUCCugGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 3191 | 0.69 | 0.551523 |
Target: 5'- gGGCAcauGCAGCugCAcaACGGGAUaauGCCAg -3' miRNA: 3'- gUCGU---UGUCGugGU--UGUCCUGg--UGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 59387 | 0.68 | 0.60668 |
Target: 5'- aAGCGcaccACAGgcUACCAGCAGGACaauaauCACCAc -3' miRNA: 3'- gUCGU----UGUC--GUGGUUGUCCUG------GUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 61664 | 0.68 | 0.617815 |
Target: 5'- -cGUAGCGGUGCCAGCGGuGGCUAUa- -3' miRNA: 3'- guCGUUGUCGUGGUUGUC-CUGGUGgu -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 61085 | 0.68 | 0.625618 |
Target: 5'- uGGCugaGACAGCACCAAaacuucgugcugacCGGGaaagaaucaacGCCGCCAg -3' miRNA: 3'- gUCG---UUGUCGUGGUU--------------GUCC-----------UGGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 17105 | 0.68 | 0.640114 |
Target: 5'- uGGCAuUAGCGCCGGugcCAGGuguuuuagcACCGCCAc -3' miRNA: 3'- gUCGUuGUCGUGGUU---GUCC---------UGGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 59430 | 0.68 | 0.651258 |
Target: 5'- -uGCAGCAGCGCCAGCGuGAUguugCugCAc -3' miRNA: 3'- guCGUUGUCGUGGUUGUcCUG----GugGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 26796 | 0.68 | 0.651258 |
Target: 5'- cCGGCAGCacgGGaCGCCGuCAGGucacccGCCGCCAc -3' miRNA: 3'- -GUCGUUG---UC-GUGGUuGUCC------UGGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 8877 | 0.67 | 0.681224 |
Target: 5'- cCAGCAGCccuacagcccccugAGCACCAACGucACCACg- -3' miRNA: 3'- -GUCGUUG--------------UCGUGGUUGUccUGGUGgu -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 9642 | 0.67 | 0.684536 |
Target: 5'- -uGCGGCAgGC-CCGGCAGGcCCACa- -3' miRNA: 3'- guCGUUGU-CGuGGUUGUCCuGGUGgu -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 31967 | 0.67 | 0.695541 |
Target: 5'- gGGCAcucCAGCGCCAGCAuGGuCUACa- -3' miRNA: 3'- gUCGUu--GUCGUGGUUGU-CCuGGUGgu -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 7998 | 0.67 | 0.706483 |
Target: 5'- gAGCAaauauuacccugACGGCGCUGACAGuuUCACCGg -3' miRNA: 3'- gUCGU------------UGUCGUGGUUGUCcuGGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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