Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 14659 | 3' | -54.4 | NC_003525.1 | + | 9682 | 0.67 | 0.706483 |
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Target: 5'- aCAGguGCGGCagGCCcgGugGGGGCgACCGg -3' miRNA: 3'- -GUCguUGUCG--UGG--UugUCCUGgUGGU- -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 20463 | 0.67 | 0.706483 |
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Target: 5'- cCGGCAACcGCACCGAauGGAgCCcCCAu -3' miRNA: 3'- -GUCGUUGuCGUGGUUguCCU-GGuGGU- -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 19780 | 0.67 | 0.717351 |
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Target: 5'- uCAGguACAagcGCACCAAuCAGGuuuacacccuucGCCACCc -3' miRNA: 3'- -GUCguUGU---CGUGGUU-GUCC------------UGGUGGu -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 52873 | 0.66 | 0.728132 |
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Target: 5'- cCAGCAAgGGcCACCAuauCAcuACCGCCAu -3' miRNA: 3'- -GUCGUUgUC-GUGGUu--GUccUGGUGGU- -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 16168 | 0.66 | 0.748334 |
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Target: 5'- uCAGCAcugagcacagaacGCAGCACCAAaaa-GCCAUCAg -3' miRNA: 3'- -GUCGU-------------UGUCGUGGUUguccUGGUGGU- -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 3848 | 0.66 | 0.749386 |
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Target: 5'- aAGCAACGG-GCCgAACAGGaaGCCGCa- -3' miRNA: 3'- gUCGUUGUCgUGG-UUGUCC--UGGUGgu -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 4682 | 0.66 | 0.749386 |
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Target: 5'- aCAGCAGgaAGCGCCAaaaGCGGuuUCGCCGg -3' miRNA: 3'- -GUCGUUg-UCGUGGU---UGUCcuGGUGGU- -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 47465 | 0.66 | 0.758797 |
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Target: 5'- aCGGUAauuGCAGUaaugaaaGCCAuCAGGGCCGCa- -3' miRNA: 3'- -GUCGU---UGUCG-------UGGUuGUCCUGGUGgu -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 39613 | 0.66 | 0.759836 |
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Target: 5'- gGGCAGC--CAgCAACAGG-CCACCc -3' miRNA: 3'- gUCGUUGucGUgGUUGUCCuGGUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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