Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14659 | 3' | -54.4 | NC_003525.1 | + | 45847 | 0.71 | 0.436045 |
Target: 5'- gAGCGGCAGCAaguggggaaCAGCAGaagaccuGACCGCCGc -3' miRNA: 3'- gUCGUUGUCGUg--------GUUGUC-------CUGGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 47465 | 0.66 | 0.758797 |
Target: 5'- aCGGUAauuGCAGUaaugaaaGCCAuCAGGGCCGCa- -3' miRNA: 3'- -GUCGU---UGUCG-------UGGUuGUCCUGGUGgu -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 52873 | 0.66 | 0.728132 |
Target: 5'- cCAGCAAgGGcCACCAuauCAcuACCGCCAu -3' miRNA: 3'- -GUCGUUgUC-GUGGUu--GUccUGGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 55809 | 0.72 | 0.417673 |
Target: 5'- aGGgAACAcCGCCAGCAGaGCCACCGa -3' miRNA: 3'- gUCgUUGUcGUGGUUGUCcUGGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 59387 | 0.68 | 0.60668 |
Target: 5'- aAGCGcaccACAGgcUACCAGCAGGACaauaauCACCAc -3' miRNA: 3'- gUCGU----UGUC--GUGGUUGUCCUG------GUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 59430 | 0.68 | 0.651258 |
Target: 5'- -uGCAGCAGCGCCAGCGuGAUguugCugCAc -3' miRNA: 3'- guCGUUGUCGUGGUUGUcCUG----GugGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 60035 | 0.72 | 0.389648 |
Target: 5'- aCAGCAGUAGCACCAA-AGGAaaCCAUCAc -3' miRNA: 3'- -GUCGUUGUCGUGGUUgUCCU--GGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 61085 | 0.68 | 0.625618 |
Target: 5'- uGGCugaGACAGCACCAAaacuucgugcugacCGGGaaagaaucaacGCCGCCAg -3' miRNA: 3'- gUCG---UUGUCGUGGUU--------------GUCC-----------UGGUGGU- -5' |
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14659 | 3' | -54.4 | NC_003525.1 | + | 61664 | 0.68 | 0.617815 |
Target: 5'- -cGUAGCGGUGCCAGCGGuGGCUAUa- -3' miRNA: 3'- guCGUUGUCGUGGUUGUC-CUGGUGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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