Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 14659 | 3' | -54.4 | NC_003525.1 | + | 59387 | 0.68 | 0.60668 |
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Target: 5'- aAGCGcaccACAGgcUACCAGCAGGACaauaauCACCAc -3' miRNA: 3'- gUCGU----UGUC--GUGGUUGUCCUG------GUGGU- -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 17105 | 0.68 | 0.640114 |
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Target: 5'- uGGCAuUAGCGCCGGugcCAGGuguuuuagcACCGCCAc -3' miRNA: 3'- gUCGUuGUCGUGGUU---GUCC---------UGGUGGU- -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 26796 | 0.68 | 0.651258 |
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Target: 5'- cCGGCAGCacgGGaCGCCGuCAGGucacccGCCGCCAc -3' miRNA: 3'- -GUCGUUG---UC-GUGGUuGUCC------UGGUGGU- -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 8877 | 0.67 | 0.681224 |
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Target: 5'- cCAGCAGCccuacagcccccugAGCACCAACGucACCACg- -3' miRNA: 3'- -GUCGUUG--------------UCGUGGUUGUccUGGUGgu -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 31967 | 0.67 | 0.695541 |
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Target: 5'- gGGCAcucCAGCGCCAGCAuGGuCUACa- -3' miRNA: 3'- gUCGUu--GUCGUGGUUGU-CCuGGUGgu -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 20463 | 0.67 | 0.706483 |
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Target: 5'- cCGGCAACcGCACCGAauGGAgCCcCCAu -3' miRNA: 3'- -GUCGUUGuCGUGGUUguCCU-GGuGGU- -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 19780 | 0.67 | 0.717351 |
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Target: 5'- uCAGguACAagcGCACCAAuCAGGuuuacacccuucGCCACCc -3' miRNA: 3'- -GUCguUGU---CGUGGUU-GUCC------------UGGUGGu -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 16168 | 0.66 | 0.748334 |
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Target: 5'- uCAGCAcugagcacagaacGCAGCACCAAaaa-GCCAUCAg -3' miRNA: 3'- -GUCGU-------------UGUCGUGGUUguccUGGUGGU- -5' |
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| 14659 | 3' | -54.4 | NC_003525.1 | + | 17810 | 1.09 | 0.001221 |
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Target: 5'- cCAGCAACAGCACCAACAGGACCACCAa -3' miRNA: 3'- -GUCGUUGUCGUGGUUGUCCUGGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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