miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14667 3' -50.5 NC_003525.1 + 19796 0.71 0.727645
Target:  5'- aCCGCCAGCAACcaUAUCaGGUacaAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGuaAUGG-CCG---UCGUGc -5'
14667 3' -50.5 NC_003525.1 + 20188 0.69 0.855658
Target:  5'- -aGCCAGCAAUucaggaucgGUUGCCaGCuGCGCGc -3'
miRNA:   3'- ggUGGUUGUUG---------UAAUGGcCGuCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 20434 0.7 0.790407
Target:  5'- aCCGCCAuGCGugAUgcugaaACCGuGCAGCAgGa -3'
miRNA:   3'- -GGUGGU-UGUugUAa-----UGGC-CGUCGUgC- -5'
14667 3' -50.5 NC_003525.1 + 20701 0.67 0.902253
Target:  5'- uUCAuUCAACAACug-GCUGGCAGCuuccCGg -3'
miRNA:   3'- -GGU-GGUUGUUGuaaUGGCCGUCGu---GC- -5'
14667 3' -50.5 NC_003525.1 + 20789 0.68 0.887794
Target:  5'- uUCGCCcACAACAggaagugacGCCGGaAGCACa -3'
miRNA:   3'- -GGUGGuUGUUGUaa-------UGGCCgUCGUGc -5'
14667 3' -50.5 NC_003525.1 + 21582 0.66 0.938805
Target:  5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3'
miRNA:   3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5'
14667 3' -50.5 NC_003525.1 + 22655 0.71 0.738426
Target:  5'- gCCACCAaccGCGACcgUACCGGacCAGaACGc -3'
miRNA:   3'- -GGUGGU---UGUUGuaAUGGCC--GUCgUGC- -5'
14667 3' -50.5 NC_003525.1 + 24377 0.72 0.661293
Target:  5'- gCACCAAgGugacGCAaUACCGGCGGCguACGc -3'
miRNA:   3'- gGUGGUUgU----UGUaAUGGCCGUCG--UGC- -5'
14667 3' -50.5 NC_003525.1 + 26334 0.7 0.790407
Target:  5'- gCCGCCuGCuGGCGUgacaaACCGGCAuCACGg -3'
miRNA:   3'- -GGUGGuUG-UUGUAa----UGGCCGUcGUGC- -5'
14667 3' -50.5 NC_003525.1 + 26812 1.13 0.001987
Target:  5'- aCCACCAACAACAUUACCGGCAGCACGg -3'
miRNA:   3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 29111 0.71 0.727645
Target:  5'- aCACCAaaGCAcgGUUGCgGGCAGCAa- -3'
miRNA:   3'- gGUGGU--UGUugUAAUGgCCGUCGUgc -5'
14667 3' -50.5 NC_003525.1 + 30525 0.66 0.943394
Target:  5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5'
14667 3' -50.5 NC_003525.1 + 31261 0.67 0.927773
Target:  5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5'
14667 3' -50.5 NC_003525.1 + 35786 0.72 0.694754
Target:  5'- gCCGCCAuacCggUAUUGCa-GCGGCACGa -3'
miRNA:   3'- -GGUGGUu--GuuGUAAUGgcCGUCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 46245 0.83 0.182406
Target:  5'- aUCACCAACAACA-UGCCGGaaCAGUACGa -3'
miRNA:   3'- -GGUGGUUGUUGUaAUGGCC--GUCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 46942 0.67 0.921825
Target:  5'- gCGCCG--GACGUUGCCGcGCuaacaGGCGCa -3'
miRNA:   3'- gGUGGUugUUGUAAUGGC-CG-----UCGUGc -5'
14667 3' -50.5 NC_003525.1 + 52921 0.69 0.838094
Target:  5'- gCGCCAGCcuuCGaaGCUGGCuGCGCGg -3'
miRNA:   3'- gGUGGUUGuu-GUaaUGGCCGuCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 55733 0.67 0.909063
Target:  5'- gCACCAaacuguGCGGCGUgauuUACCGGC-GUACc -3'
miRNA:   3'- gGUGGU------UGUUGUA----AUGGCCGuCGUGc -5'
14667 3' -50.5 NC_003525.1 + 55802 0.67 0.927773
Target:  5'- aCCGCCAGCAGagccACCGaC-GCACGg -3'
miRNA:   3'- -GGUGGUUGUUguaaUGGCcGuCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 56823 0.74 0.549495
Target:  5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3'
miRNA:   3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.