miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14667 3' -50.5 NC_003525.1 + 2789 0.67 0.927773
Target:  5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3'
miRNA:   3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5'
14667 3' -50.5 NC_003525.1 + 2882 0.68 0.895162
Target:  5'- gCGCCuguuCAGCAgacACCGGCguuuaaGGCACa -3'
miRNA:   3'- gGUGGuu--GUUGUaa-UGGCCG------UCGUGc -5'
14667 3' -50.5 NC_003525.1 + 5985 0.72 0.705797
Target:  5'- gCCACCGACu-CAUUACCGuGC-GUACc -3'
miRNA:   3'- -GGUGGUUGuuGUAAUGGC-CGuCGUGc -5'
14667 3' -50.5 NC_003525.1 + 6045 0.66 0.938805
Target:  5'- -aACCGuCAGCAUUAaguCCGGUgAGCAUGc -3'
miRNA:   3'- ggUGGUuGUUGUAAU---GGCCG-UCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 6137 0.7 0.770048
Target:  5'- aCACCAcACAGCGUgACgGGgAGCugGu -3'
miRNA:   3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5'
14667 3' -50.5 NC_003525.1 + 6294 0.68 0.862414
Target:  5'- cCCACCAcgguauaacGCAGCAgaacauucagggUGCCGGUuGCAgCGg -3'
miRNA:   3'- -GGUGGU---------UGUUGUa-----------AUGGCCGuCGU-GC- -5'
14667 3' -50.5 NC_003525.1 + 6915 0.67 0.915587
Target:  5'- aCACCAACGACug-GCggcugaaugccaCGGCAGC-Ca -3'
miRNA:   3'- gGUGGUUGUUGuaaUG------------GCCGUCGuGc -5'
14667 3' -50.5 NC_003525.1 + 7887 0.8 0.294756
Target:  5'- gCCACCGGCAGCAUcuUACUGaaAGCGCGa -3'
miRNA:   3'- -GGUGGUUGUUGUA--AUGGCcgUCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 10300 0.66 0.948223
Target:  5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3'
miRNA:   3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 11019 0.78 0.386669
Target:  5'- uCCGCCAguACAGCGgaaUGCUcgGGCAGCAUGg -3'
miRNA:   3'- -GGUGGU--UGUUGUa--AUGG--CCGUCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 11236 0.67 0.927773
Target:  5'- gCGCCGACGACAgcuccugucugUACUGuucaGCAGgGCGg -3'
miRNA:   3'- gGUGGUUGUUGUa----------AUGGC----CGUCgUGC- -5'
14667 3' -50.5 NC_003525.1 + 11730 0.68 0.880153
Target:  5'- uUACCGGCAAac---CCGGCGGCAa- -3'
miRNA:   3'- gGUGGUUGUUguaauGGCCGUCGUgc -5'
14667 3' -50.5 NC_003525.1 + 12026 0.69 0.855658
Target:  5'- gUCGCCAgcGCGACAUUACCGuuuGCAUc -3'
miRNA:   3'- -GGUGGU--UGUUGUAAUGGCcguCGUGc -5'
14667 3' -50.5 NC_003525.1 + 16587 0.69 0.838094
Target:  5'- ---aCGACAAUAUUGCUGGCAcCACa -3'
miRNA:   3'- ggugGUUGUUGUAAUGGCCGUcGUGc -5'
14667 3' -50.5 NC_003525.1 + 17131 0.69 0.819625
Target:  5'- aCCGCCcACAGgGUgACUGGCAG-ACGu -3'
miRNA:   3'- -GGUGGuUGUUgUAaUGGCCGUCgUGC- -5'
14667 3' -50.5 NC_003525.1 + 18710 0.75 0.506177
Target:  5'- -gGCCAGCAACG-UAgCGGCGGaCGCGa -3'
miRNA:   3'- ggUGGUUGUUGUaAUgGCCGUC-GUGC- -5'
14667 3' -50.5 NC_003525.1 + 19529 0.67 0.907724
Target:  5'- gCCACCGGCAaaaauauccugcACAguugcgacacCCGGCAGCcccauACGg -3'
miRNA:   3'- -GGUGGUUGU------------UGUaau-------GGCCGUCG-----UGC- -5'
14667 3' -50.5 NC_003525.1 + 19634 0.68 0.872246
Target:  5'- aUCACUGACAGCcUUACCGGUuGC-Cu -3'
miRNA:   3'- -GGUGGUUGUUGuAAUGGCCGuCGuGc -5'
14667 3' -50.5 NC_003525.1 + 19684 0.71 0.727645
Target:  5'- gCAcCCGGCGACAUcuUACCGGuCAGC-Ca -3'
miRNA:   3'- gGU-GGUUGUUGUA--AUGGCC-GUCGuGc -5'
14667 3' -50.5 NC_003525.1 + 19712 0.67 0.921825
Target:  5'- gUACCuGAUAugGUUGCUGGCGGUGUGg -3'
miRNA:   3'- gGUGG-UUGUugUAAUGGCCGUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.