miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14667 3' -50.5 NC_003525.1 + 46245 0.83 0.182406
Target:  5'- aUCACCAACAACA-UGCCGGaaCAGUACGa -3'
miRNA:   3'- -GGUGGUUGUUGUaAUGGCC--GUCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 6045 0.66 0.938805
Target:  5'- -aACCGuCAGCAUUAaguCCGGUgAGCAUGc -3'
miRNA:   3'- ggUGGUuGUUGUAAU---GGCCG-UCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 11236 0.67 0.927773
Target:  5'- gCGCCGACGACAgcuccugucugUACUGuucaGCAGgGCGg -3'
miRNA:   3'- gGUGGUUGUUGUa----------AUGGC----CGUCgUGC- -5'
14667 3' -50.5 NC_003525.1 + 46942 0.67 0.921825
Target:  5'- gCGCCG--GACGUUGCCGcGCuaacaGGCGCa -3'
miRNA:   3'- gGUGGUugUUGUAAUGGC-CG-----UCGUGc -5'
14667 3' -50.5 NC_003525.1 + 19712 0.67 0.921825
Target:  5'- gUACCuGAUAugGUUGCUGGCGGUGUGg -3'
miRNA:   3'- gGUGG-UUGUugUAAUGGCCGUCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 2882 0.68 0.895162
Target:  5'- gCGCCuguuCAGCAgacACCGGCguuuaaGGCACa -3'
miRNA:   3'- gGUGGuu--GUUGUaa-UGGCCG------UCGUGc -5'
14667 3' -50.5 NC_003525.1 + 20789 0.68 0.887794
Target:  5'- uUCGCCcACAACAggaagugacGCCGGaAGCACa -3'
miRNA:   3'- -GGUGGuUGUUGUaa-------UGGCCgUCGUGc -5'
14667 3' -50.5 NC_003525.1 + 16587 0.69 0.838094
Target:  5'- ---aCGACAAUAUUGCUGGCAcCACa -3'
miRNA:   3'- ggugGUUGUUGUAAUGGCCGUcGUGc -5'
14667 3' -50.5 NC_003525.1 + 52921 0.69 0.838094
Target:  5'- gCGCCAGCcuuCGaaGCUGGCuGCGCGg -3'
miRNA:   3'- gGUGGUUGuu-GUaaUGGCCGuCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 18710 0.75 0.506177
Target:  5'- -gGCCAGCAACG-UAgCGGCGGaCGCGa -3'
miRNA:   3'- ggUGGUUGUUGUaAUgGCCGUC-GUGC- -5'
14667 3' -50.5 NC_003525.1 + 56823 0.74 0.549495
Target:  5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3'
miRNA:   3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5'
14667 3' -50.5 NC_003525.1 + 22655 0.71 0.738426
Target:  5'- gCCACCAaccGCGACcgUACCGGacCAGaACGc -3'
miRNA:   3'- -GGUGGU---UGUUGuaAUGGCC--GUCgUGC- -5'
14667 3' -50.5 NC_003525.1 + 6137 0.7 0.770048
Target:  5'- aCACCAcACAGCGUgACgGGgAGCugGu -3'
miRNA:   3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5'
14667 3' -50.5 NC_003525.1 + 20434 0.7 0.790407
Target:  5'- aCCGCCAuGCGugAUgcugaaACCGuGCAGCAgGa -3'
miRNA:   3'- -GGUGGU-UGUugUAa-----UGGC-CGUCGUgC- -5'
14667 3' -50.5 NC_003525.1 + 17131 0.69 0.819625
Target:  5'- aCCGCCcACAGgGUgACUGGCAG-ACGu -3'
miRNA:   3'- -GGUGGuUGUUgUAaUGGCCGUCgUGC- -5'
14667 3' -50.5 NC_003525.1 + 26812 1.13 0.001987
Target:  5'- aCCACCAACAACAUUACCGGCAGCACGg -3'
miRNA:   3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5'
14667 3' -50.5 NC_003525.1 + 30525 0.66 0.943394
Target:  5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5'
14667 3' -50.5 NC_003525.1 + 21582 0.66 0.938805
Target:  5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3'
miRNA:   3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5'
14667 3' -50.5 NC_003525.1 + 31261 0.67 0.927773
Target:  5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5'
14667 3' -50.5 NC_003525.1 + 55802 0.67 0.927773
Target:  5'- aCCGCCAGCAGagccACCGaC-GCACGg -3'
miRNA:   3'- -GGUGGUUGUUguaaUGGCcGuCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.