Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14667 | 3' | -50.5 | NC_003525.1 | + | 6915 | 0.67 | 0.915587 |
Target: 5'- aCACCAACGACug-GCggcugaaugccaCGGCAGC-Ca -3' miRNA: 3'- gGUGGUUGUUGuaaUG------------GCCGUCGuGc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 12026 | 0.69 | 0.855658 |
Target: 5'- gUCGCCAgcGCGACAUUACCGuuuGCAUc -3' miRNA: 3'- -GGUGGU--UGUUGUAAUGGCcguCGUGc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 19796 | 0.71 | 0.727645 |
Target: 5'- aCCGCCAGCAACcaUAUCaGGUacaAGCGCa -3' miRNA: 3'- -GGUGGUUGUUGuaAUGG-CCG---UCGUGc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 26812 | 1.13 | 0.001987 |
Target: 5'- aCCACCAACAACAUUACCGGCAGCACGg -3' miRNA: 3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 10300 | 0.66 | 0.948223 |
Target: 5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3' miRNA: 3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 30525 | 0.66 | 0.943394 |
Target: 5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3' miRNA: 3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 21582 | 0.66 | 0.938805 |
Target: 5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3' miRNA: 3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 31261 | 0.67 | 0.927773 |
Target: 5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3' miRNA: 3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 55802 | 0.67 | 0.927773 |
Target: 5'- aCCGCCAGCAGagccACCGaC-GCACGg -3' miRNA: 3'- -GGUGGUUGUUguaaUGGCcGuCGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 20188 | 0.69 | 0.855658 |
Target: 5'- -aGCCAGCAAUucaggaucgGUUGCCaGCuGCGCGc -3' miRNA: 3'- ggUGGUUGUUG---------UAAUGGcCGuCGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 61204 | 0.68 | 0.880153 |
Target: 5'- aUCuCUGGCGGCGUUGauucuuucCCGGuCAGCACGa -3' miRNA: 3'- -GGuGGUUGUUGUAAU--------GGCC-GUCGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 11730 | 0.68 | 0.880153 |
Target: 5'- uUACCGGCAAac---CCGGCGGCAa- -3' miRNA: 3'- gGUGGUUGUUguaauGGCCGUCGUgc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 59958 | 0.67 | 0.915587 |
Target: 5'- -aGCCAAa---AUUugUGGCGGCACa -3' miRNA: 3'- ggUGGUUguugUAAugGCCGUCGUGc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 19634 | 0.68 | 0.872246 |
Target: 5'- aUCACUGACAGCcUUACCGGUuGC-Cu -3' miRNA: 3'- -GGUGGUUGUUGuAAUGGCCGuCGuGc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 55733 | 0.67 | 0.909063 |
Target: 5'- gCACCAaacuguGCGGCGUgauuUACCGGC-GUACc -3' miRNA: 3'- gGUGGU------UGUUGUA----AUGGCCGuCGUGc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 20701 | 0.67 | 0.902253 |
Target: 5'- uUCAuUCAACAACug-GCUGGCAGCuuccCGg -3' miRNA: 3'- -GGU-GGUUGUUGuaaUGGCCGUCGu---GC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 6294 | 0.68 | 0.862414 |
Target: 5'- cCCACCAcgguauaacGCAGCAgaacauucagggUGCCGGUuGCAgCGg -3' miRNA: 3'- -GGUGGU---------UGUUGUa-----------AUGGCCGuCGU-GC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 26334 | 0.7 | 0.790407 |
Target: 5'- gCCGCCuGCuGGCGUgacaaACCGGCAuCACGg -3' miRNA: 3'- -GGUGGuUG-UUGUAa----UGGCCGUcGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 56913 | 0.67 | 0.909063 |
Target: 5'- aCCGCCAGCGucCAUUccugucGCUGGCGGUu-- -3' miRNA: 3'- -GGUGGUUGUu-GUAA------UGGCCGUCGugc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 19529 | 0.67 | 0.907724 |
Target: 5'- gCCACCGGCAaaaauauccugcACAguugcgacacCCGGCAGCcccauACGg -3' miRNA: 3'- -GGUGGUUGU------------UGUaau-------GGCCGUCG-----UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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