Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14672 | 5' | -52.3 | NC_003525.1 | + | 58076 | 0.66 | 0.887404 |
Target: 5'- -gAUGUucuuCGCCAccCAUGcCAGCGCCu -3' miRNA: 3'- caUGCGu---GCGGUucGUACuGUUGCGG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 48236 | 0.66 | 0.879783 |
Target: 5'- -gAUGUuucGCGUCAGGUgcuAUGGCAugGUCa -3' miRNA: 3'- caUGCG---UGCGGUUCG---UACUGUugCGG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 6356 | 0.66 | 0.879007 |
Target: 5'- aGU-CGCACGCUguucccacgucuuGAGCcggugcauguUGACAGCGCg -3' miRNA: 3'- -CAuGCGUGCGG-------------UUCGu---------ACUGUUGCGg -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 25216 | 0.66 | 0.871899 |
Target: 5'- uUACGUacACGCU--GCAUGAUuucCGCCg -3' miRNA: 3'- cAUGCG--UGCGGuuCGUACUGuu-GCGG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 52783 | 0.66 | 0.867044 |
Target: 5'- -aACGCccgcucuccagcucaACGCCAAuuGCAcGACGcccuaGCGCCa -3' miRNA: 3'- caUGCG---------------UGCGGUU--CGUaCUGU-----UGCGG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 35789 | 0.66 | 0.863756 |
Target: 5'- -aGCGC-CGCCAuaccGGUAUuGCAGCGgCa -3' miRNA: 3'- caUGCGuGCGGU----UCGUAcUGUUGCgG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 58326 | 0.66 | 0.863756 |
Target: 5'- uGU-CGaUAC-CCcAGCAUGACAGCGCa -3' miRNA: 3'- -CAuGC-GUGcGGuUCGUACUGUUGCGg -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 2612 | 0.66 | 0.863756 |
Target: 5'- gGUGCG-ACGUCAGGCGUGGCuaucaGUa -3' miRNA: 3'- -CAUGCgUGCGGUUCGUACUGuug--CGg -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 56144 | 0.66 | 0.863756 |
Target: 5'- -cGCGUuuaGCGCCAcucuucccGCAUGGCGcaaaauCGCCg -3' miRNA: 3'- caUGCG---UGCGGUu-------CGUACUGUu-----GCGG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 47048 | 0.66 | 0.855364 |
Target: 5'- uUAUGCugguuacuguuGCGCCuguuAGCGcGGCAACGUCc -3' miRNA: 3'- cAUGCG-----------UGCGGu---UCGUaCUGUUGCGG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 21230 | 0.67 | 0.837863 |
Target: 5'- gGUACagGCcCGCCuuGCccGUGGCAACGCg -3' miRNA: 3'- -CAUG--CGuGCGGuuCG--UACUGUUGCGg -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 46679 | 0.67 | 0.828772 |
Target: 5'- -cAUGCGgGCCAAuGCGcUGACuGACGCg -3' miRNA: 3'- caUGCGUgCGGUU-CGU-ACUG-UUGCGg -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 20389 | 0.67 | 0.828772 |
Target: 5'- gGUGCGguUGCCGGauauCGUGGCAgACGUCa -3' miRNA: 3'- -CAUGCguGCGGUUc---GUACUGU-UGCGG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 20088 | 0.67 | 0.828772 |
Target: 5'- gGUGCGCGCGC--AGC-UGGCAACcgauCCu -3' miRNA: 3'- -CAUGCGUGCGguUCGuACUGUUGc---GG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 31954 | 0.67 | 0.819466 |
Target: 5'- ---aGCACGCauagguauGGCGUGACugauACGCUu -3' miRNA: 3'- caugCGUGCGgu------UCGUACUGu---UGCGG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 26254 | 0.67 | 0.819466 |
Target: 5'- --uUGuCACGCC-AGCA-GGCGGCGUCu -3' miRNA: 3'- cauGC-GUGCGGuUCGUaCUGUUGCGG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 36116 | 0.67 | 0.808995 |
Target: 5'- -cAUGCAggcUGCCAuuaucgaauggcaGGCAacUGGCGACGCUa -3' miRNA: 3'- caUGCGU---GCGGU-------------UCGU--ACUGUUGCGG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 8122 | 0.68 | 0.798291 |
Target: 5'- -gACGCAcuggugcCGCUGAGCGcauccggugaaacUGuCAGCGCCg -3' miRNA: 3'- caUGCGU-------GCGGUUCGU-------------ACuGUUGCGG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 7317 | 0.68 | 0.79037 |
Target: 5'- aGUACGgGCuugucGCCAGuGUAUGACGauAUGCCc -3' miRNA: 3'- -CAUGCgUG-----CGGUU-CGUACUGU--UGCGG- -5' |
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14672 | 5' | -52.3 | NC_003525.1 | + | 59427 | 0.69 | 0.738621 |
Target: 5'- aUAUGCagcaGCGCC-AGCGUGAUguugcugcacuuGAUGCCa -3' miRNA: 3'- cAUGCG----UGCGGuUCGUACUG------------UUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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