miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1469 5' -45.1 NC_001335.1 + 34274 0.66 0.998186
Target:  5'- -cGGCgGUGUgCGCCgGUCGGCGCGgaugUCg -3'
miRNA:   3'- guUUG-CAUAaGUGG-UAGCUGCGUa---AG- -5'
1469 5' -45.1 NC_001335.1 + 1349 0.66 0.998186
Target:  5'- --------aUCGCCAUCGACGCc--- -3'
miRNA:   3'- guuugcauaAGUGGUAGCUGCGuaag -5'
1469 5' -45.1 NC_001335.1 + 14057 0.66 0.998186
Target:  5'- -cAGCGUGUgCAgCGUCGGUGCGUUg -3'
miRNA:   3'- guUUGCAUAaGUgGUAGCUGCGUAAg -5'
1469 5' -45.1 NC_001335.1 + 47401 0.66 0.997782
Target:  5'- gAAGCaccUGaUCACCGUCGucguUGCAUUCg -3'
miRNA:   3'- gUUUGc--AUaAGUGGUAGCu---GCGUAAG- -5'
1469 5' -45.1 NC_001335.1 + 44495 0.66 0.997782
Target:  5'- aCGAAgGUAUg-GCCggCGGCGgGUUCa -3'
miRNA:   3'- -GUUUgCAUAagUGGuaGCUGCgUAAG- -5'
1469 5' -45.1 NC_001335.1 + 20282 0.66 0.996748
Target:  5'- -cGAUGUGUUCACCGggGACuacaCGUUCc -3'
miRNA:   3'- guUUGCAUAAGUGGUagCUGc---GUAAG- -5'
1469 5' -45.1 NC_001335.1 + 25800 0.66 0.996748
Target:  5'- gGAACcc--UCGCCGUCGGCgggcugGCGUUCg -3'
miRNA:   3'- gUUUGcauaAGUGGUAGCUG------CGUAAG- -5'
1469 5' -45.1 NC_001335.1 + 40393 0.67 0.994477
Target:  5'- gAGACGUuugCGCCAUCGACcuGCu--- -3'
miRNA:   3'- gUUUGCAuaaGUGGUAGCUG--CGuaag -5'
1469 5' -45.1 NC_001335.1 + 16165 0.67 0.993483
Target:  5'- aUAGGCGUAggCAUCGUCGcCGUAg-- -3'
miRNA:   3'- -GUUUGCAUaaGUGGUAGCuGCGUaag -5'
1469 5' -45.1 NC_001335.1 + 46168 0.68 0.989622
Target:  5'- -cGGCGgaaaagUCGCCGaCGACGCAUg- -3'
miRNA:   3'- guUUGCaua---AGUGGUaGCUGCGUAag -5'
1469 5' -45.1 NC_001335.1 + 7320 0.68 0.987998
Target:  5'- aCGAACGUcgggcgGUUacccuCCAUCGACGCGg-- -3'
miRNA:   3'- -GUUUGCA------UAAgu---GGUAGCUGCGUaag -5'
1469 5' -45.1 NC_001335.1 + 50660 0.68 0.987998
Target:  5'- -cGACGUAgaucUUGCCGUCGAUGUAa-- -3'
miRNA:   3'- guUUGCAUa---AGUGGUAGCUGCGUaag -5'
1469 5' -45.1 NC_001335.1 + 32849 0.68 0.986184
Target:  5'- gAGGcCGUcgUCACCGUCGccgacgGCGCggUCu -3'
miRNA:   3'- gUUU-GCAuaAGUGGUAGC------UGCGuaAG- -5'
1469 5' -45.1 NC_001335.1 + 32964 0.69 0.984167
Target:  5'- uUAAugGggcaugCGCCGUUGGCGCAcUCu -3'
miRNA:   3'- -GUUugCauaa--GUGGUAGCUGCGUaAG- -5'
1469 5' -45.1 NC_001335.1 + 12674 0.7 0.970599
Target:  5'- uGGACGUGaaagccgCugCGUCGGCGaCGUUCc -3'
miRNA:   3'- gUUUGCAUaa-----GugGUAGCUGC-GUAAG- -5'
1469 5' -45.1 NC_001335.1 + 6401 0.73 0.877801
Target:  5'- gAGGCGUAcaugCGCCGUCGuGCGCGUagUCg -3'
miRNA:   3'- gUUUGCAUaa--GUGGUAGC-UGCGUA--AG- -5'
1469 5' -45.1 NC_001335.1 + 37901 0.74 0.869347
Target:  5'- -cGGCGUcgUCGCCGUCGGCcaggaGUUCa -3'
miRNA:   3'- guUUGCAuaAGUGGUAGCUGcg---UAAG- -5'
1469 5' -45.1 NC_001335.1 + 32123 0.74 0.860606
Target:  5'- aGAGCGUGUUCgagcacGCC-UCGGCGaCGUUCu -3'
miRNA:   3'- gUUUGCAUAAG------UGGuAGCUGC-GUAAG- -5'
1469 5' -45.1 NC_001335.1 + 19501 0.74 0.860606
Target:  5'- gCAGGCGgaagUCGCCAUCG-CGCAg-- -3'
miRNA:   3'- -GUUUGCaua-AGUGGUAGCuGCGUaag -5'
1469 5' -45.1 NC_001335.1 + 30260 0.79 0.584346
Target:  5'- aGGACGUGcggaUCGCCAUCGGCGCucUCa -3'
miRNA:   3'- gUUUGCAUa---AGUGGUAGCUGCGuaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.