miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14698 5' -52.4 NC_003529.1 + 609 0.69 0.936967
Target:  5'- --uCGUgGGGCACGuAGUCGggAUCGCa -3'
miRNA:   3'- cauGCAgCUCGUGC-UCGGUaaUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 12583 0.68 0.941784
Target:  5'- -aAUGUCGAGUcauauuaugcaaACGAGUCAUUGUCGUc -3'
miRNA:   3'- caUGCAGCUCG------------UGCUCGGUAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 16842 0.66 0.98361
Target:  5'- aUAC-UCG-GCGCGuGCCAcUUGCCGa -3'
miRNA:   3'- cAUGcAGCuCGUGCuCGGU-AAUGGCg -5'
14698 5' -52.4 NC_003529.1 + 20699 0.66 0.981613
Target:  5'- uGUAUGcCGAggGCGuCGAGCa--UGCCGCg -3'
miRNA:   3'- -CAUGCaGCU--CGU-GCUCGguaAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 20770 0.72 0.827263
Target:  5'- -gGCGUCGccgacauuggGGUuCGcGCCAUUGCCGCc -3'
miRNA:   3'- caUGCAGC----------UCGuGCuCGGUAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 21267 0.74 0.713362
Target:  5'- -aACGuUCGuGCGCGGGCCG-UGCCGa -3'
miRNA:   3'- caUGC-AGCuCGUGCUCGGUaAUGGCg -5'
14698 5' -52.4 NC_003529.1 + 21334 0.68 0.941784
Target:  5'- -aGCGgcgCGAGaUGCGAGCCGU--CCGUg -3'
miRNA:   3'- caUGCa--GCUC-GUGCUCGGUAauGGCG- -5'
14698 5' -52.4 NC_003529.1 + 25442 0.67 0.971778
Target:  5'- gGUAUaUCGGGCAUaguGGCCGgcggguUUGCCGCu -3'
miRNA:   3'- -CAUGcAGCUCGUGc--UCGGU------AAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 29576 0.66 0.97944
Target:  5'- uUACGUUG-GCACaGcAGCUGUUGgCGCa -3'
miRNA:   3'- cAUGCAGCuCGUG-C-UCGGUAAUgGCG- -5'
14698 5' -52.4 NC_003529.1 + 30257 1.13 0.003728
Target:  5'- aGUACGUCGAGCACGAGCCAUUACCGCa -3'
miRNA:   3'- -CAUGCAGCUCGUGCUCGGUAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 32208 0.7 0.909166
Target:  5'- -aGCGUCGcGUACc-GCgAUUGCCGCa -3'
miRNA:   3'- caUGCAGCuCGUGcuCGgUAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 43861 0.66 0.977082
Target:  5'- aUACGcggCGGGUacugcaccACGAGCagcgUGCCGCg -3'
miRNA:   3'- cAUGCa--GCUCG--------UGCUCGgua-AUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 45020 0.66 0.981613
Target:  5'- aUGCGUCuGGCACGgAGUCAacuguUUAUgGCa -3'
miRNA:   3'- cAUGCAGcUCGUGC-UCGGU-----AAUGgCG- -5'
14698 5' -52.4 NC_003529.1 + 49479 0.73 0.772652
Target:  5'- cGUGCGUCGAGgguuaCGCGAucGUCA--GCCGCg -3'
miRNA:   3'- -CAUGCAGCUC-----GUGCU--CGGUaaUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 62823 0.66 0.987105
Target:  5'- -cGCGUCGA-CGCGAucgauuCCAUUGuuGCg -3'
miRNA:   3'- caUGCAGCUcGUGCUc-----GGUAAUggCG- -5'
14698 5' -52.4 NC_003529.1 + 77859 0.73 0.763039
Target:  5'- uUGCGUUGcGGC-CGAGUCGUUguccGCCGCa -3'
miRNA:   3'- cAUGCAGC-UCGuGCUCGGUAA----UGGCG- -5'
14698 5' -52.4 NC_003529.1 + 78354 0.7 0.909166
Target:  5'- -gACGgUGAGUACGAGCCuUUGacCCGUa -3'
miRNA:   3'- caUGCaGCUCGUGCUCGGuAAU--GGCG- -5'
14698 5' -52.4 NC_003529.1 + 93285 0.7 0.902866
Target:  5'- -aGCaGUCGAGCgACGAGCCGUccacgaaauugaUGCC-Ca -3'
miRNA:   3'- caUG-CAGCUCG-UGCUCGGUA------------AUGGcG- -5'
14698 5' -52.4 NC_003529.1 + 108545 0.69 0.930335
Target:  5'- uUAUGUCGAGaagcaaauaggguaUGCGAucGCCGUUGCCGg -3'
miRNA:   3'- cAUGCAGCUC--------------GUGCU--CGGUAAUGGCg -5'
14698 5' -52.4 NC_003529.1 + 110249 0.67 0.968818
Target:  5'- aUACGcCG-GUGCaAGCgAUUGCCGCa -3'
miRNA:   3'- cAUGCaGCuCGUGcUCGgUAAUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.