miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14698 5' -52.4 NC_003529.1 + 121557 0.74 0.69292
Target:  5'- uUACGUgacCGGGCGCGuugccGCCA-UACCGCa -3'
miRNA:   3'- cAUGCA---GCUCGUGCu----CGGUaAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 25442 0.67 0.971778
Target:  5'- gGUAUaUCGGGCAUaguGGCCGgcggguUUGCCGCu -3'
miRNA:   3'- -CAUGcAGCUCGUGc--UCGGU------AAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 43861 0.66 0.977082
Target:  5'- aUACGcggCGGGUacugcaccACGAGCagcgUGCCGCg -3'
miRNA:   3'- cAUGCa--GCUCG--------UGCUCGgua-AUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 20699 0.66 0.981613
Target:  5'- uGUAUGcCGAggGCGuCGAGCa--UGCCGCg -3'
miRNA:   3'- -CAUGCaGCU--CGU-GCUCGguaAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 16842 0.66 0.98361
Target:  5'- aUAC-UCG-GCGCGuGCCAcUUGCCGa -3'
miRNA:   3'- cAUGcAGCuCGUGCuCGGU-AAUGGCg -5'
14698 5' -52.4 NC_003529.1 + 139360 0.66 0.985437
Target:  5'- ----uUCGAGCuCGGGUUAUUAUUGCg -3'
miRNA:   3'- caugcAGCUCGuGCUCGGUAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 123685 0.66 0.985437
Target:  5'- uUugGUCGAGCAgCGAuGCgCAUUcguuuUCGCu -3'
miRNA:   3'- cAugCAGCUCGU-GCU-CG-GUAAu----GGCG- -5'
14698 5' -52.4 NC_003529.1 + 139461 0.66 0.987105
Target:  5'- uGUGC-UCGAGUcuuCGAGCUGuUUACCaGCa -3'
miRNA:   3'- -CAUGcAGCUCGu--GCUCGGU-AAUGG-CG- -5'
14698 5' -52.4 NC_003529.1 + 62823 0.66 0.987105
Target:  5'- -cGCGUCGA-CGCGAucgauuCCAUUGuuGCg -3'
miRNA:   3'- caUGCAGCUcGUGCUc-----GGUAAUggCG- -5'
14698 5' -52.4 NC_003529.1 + 110249 0.67 0.968818
Target:  5'- aUACGcCG-GUGCaAGCgAUUGCCGCa -3'
miRNA:   3'- cAUGCaGCuCGUGcUCGgUAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 126539 0.68 0.954773
Target:  5'- -cAUGUCGAGCGCGGcuucGUCAcUugCGUu -3'
miRNA:   3'- caUGCAGCUCGUGCU----CGGUaAugGCG- -5'
14698 5' -52.4 NC_003529.1 + 20770 0.72 0.827263
Target:  5'- -gGCGUCGccgacauuggGGUuCGcGCCAUUGCCGCc -3'
miRNA:   3'- caUGCAGC----------UCGuGCuCGGUAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 143510 0.7 0.896323
Target:  5'- -aGCGUacaGAGauuugcCACGcGCCAUUGCCGUg -3'
miRNA:   3'- caUGCAg--CUC------GUGCuCGGUAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 93285 0.7 0.902866
Target:  5'- -aGCaGUCGAGCgACGAGCCGUccacgaaauugaUGCC-Ca -3'
miRNA:   3'- caUG-CAGCUCG-UGCUCGGUA------------AUGGcG- -5'
14698 5' -52.4 NC_003529.1 + 32208 0.7 0.909166
Target:  5'- -aGCGUCGcGUACc-GCgAUUGCCGCa -3'
miRNA:   3'- caUGCAGCuCGUGcuCGgUAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 78354 0.7 0.909166
Target:  5'- -gACGgUGAGUACGAGCCuUUGacCCGUa -3'
miRNA:   3'- caUGCaGCUCGUGCUCGGuAAU--GGCG- -5'
14698 5' -52.4 NC_003529.1 + 12583 0.68 0.941784
Target:  5'- -aAUGUCGAGUcauauuaugcaaACGAGUCAUUGUCGUc -3'
miRNA:   3'- caUGCAGCUCG------------UGCUCGGUAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 21334 0.68 0.941784
Target:  5'- -aGCGgcgCGAGaUGCGAGCCGU--CCGUg -3'
miRNA:   3'- caUGCa--GCUC-GUGCUCGGUAauGGCG- -5'
14698 5' -52.4 NC_003529.1 + 135211 0.68 0.950684
Target:  5'- -gAUGUCGGGCAa-AGUauacaaAUUACCGCg -3'
miRNA:   3'- caUGCAGCUCGUgcUCGg-----UAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 30257 1.13 0.003728
Target:  5'- aGUACGUCGAGCACGAGCCAUUACCGCa -3'
miRNA:   3'- -CAUGCAGCUCGUGCUCGGUAAUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.