miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14703 5' -50 NC_003529.1 + 66520 0.66 0.998392
Target:  5'- uUGAUCGUuuGCUugucgacGAGCAGAACauuguguuCCa -3'
miRNA:   3'- gGCUAGUAggCGA-------CUCGUUUUGgu------GG- -5'
14703 5' -50 NC_003529.1 + 40538 0.66 0.998332
Target:  5'- aCCGAUCcuuucuguggcgacAUCaUGUUGAGCAcucgcAGCCACg -3'
miRNA:   3'- -GGCUAG--------------UAG-GCGACUCGUu----UUGGUGg -5'
14703 5' -50 NC_003529.1 + 30297 0.66 0.998106
Target:  5'- gCCGG-CAUUCGCaGAGCGGucAACuCACg -3'
miRNA:   3'- -GGCUaGUAGGCGaCUCGUU--UUG-GUGg -5'
14703 5' -50 NC_003529.1 + 37869 0.66 0.998106
Target:  5'- cCCGAUCAcgguuUgCGCgUGcGCGAAAUgGCCc -3'
miRNA:   3'- -GGCUAGU-----AgGCG-ACuCGUUUUGgUGG- -5'
14703 5' -50 NC_003529.1 + 114984 0.66 0.998106
Target:  5'- aCGGUCGagaCG-UGAGCAAuguucgcgcuugGACCACCc -3'
miRNA:   3'- gGCUAGUag-GCgACUCGUU------------UUGGUGG- -5'
14703 5' -50 NC_003529.1 + 148526 0.66 0.998106
Target:  5'- aCGuUCGUagCCGCUGAcCAAAcgcguuccGCCGCCc -3'
miRNA:   3'- gGCuAGUA--GGCGACUcGUUU--------UGGUGG- -5'
14703 5' -50 NC_003529.1 + 20544 0.66 0.997739
Target:  5'- gUGAUaauccuUUCGC-GGGCAcgGCCACCg -3'
miRNA:   3'- gGCUAgu----AGGCGaCUCGUuuUGGUGG- -5'
14703 5' -50 NC_003529.1 + 13391 0.66 0.997314
Target:  5'- cCCGAUCAUCguCGCcGuucuCAAuaauGACCACCu -3'
miRNA:   3'- -GGCUAGUAG--GCGaCuc--GUU----UUGGUGG- -5'
14703 5' -50 NC_003529.1 + 46345 0.66 0.997314
Target:  5'- cCCGAUgCGUCgGUaGGGCGGuuCUACUg -3'
miRNA:   3'- -GGCUA-GUAGgCGaCUCGUUuuGGUGG- -5'
14703 5' -50 NC_003529.1 + 115380 0.66 0.997222
Target:  5'- aCCGAga---UGCUGAGCcgcauauuaauGGCCACCa -3'
miRNA:   3'- -GGCUaguagGCGACUCGuu---------UUGGUGG- -5'
14703 5' -50 NC_003529.1 + 58111 0.67 0.996265
Target:  5'- gCCGAgaUCGUCgCGCUc--CGAAugCACCa -3'
miRNA:   3'- -GGCU--AGUAG-GCGAcucGUUUugGUGG- -5'
14703 5' -50 NC_003529.1 + 153443 0.67 0.995625
Target:  5'- uUGcgCAUaCCGUacgUGAGCGAuGCUGCCg -3'
miRNA:   3'- gGCuaGUA-GGCG---ACUCGUUuUGGUGG- -5'
14703 5' -50 NC_003529.1 + 83101 0.68 0.99212
Target:  5'- cUCGAUCuuuguggugCCGUgcaauUGGGCAcacGCCACCg -3'
miRNA:   3'- -GGCUAGua-------GGCG-----ACUCGUuu-UGGUGG- -5'
14703 5' -50 NC_003529.1 + 59365 0.68 0.99212
Target:  5'- uCgGGUCGaCCGgUGAGCGAAGCguCACg -3'
miRNA:   3'- -GgCUAGUaGGCgACUCGUUUUG--GUGg -5'
14703 5' -50 NC_003529.1 + 27988 0.68 0.989679
Target:  5'- gCCGGUCuuUCUcaGCUcGGGCAAAACUuCCu -3'
miRNA:   3'- -GGCUAGu-AGG--CGA-CUCGUUUUGGuGG- -5'
14703 5' -50 NC_003529.1 + 3845 0.68 0.988255
Target:  5'- gCGAU-GUCUGCUGuAGUAGAAuCCGCUu -3'
miRNA:   3'- gGCUAgUAGGCGAC-UCGUUUU-GGUGG- -5'
14703 5' -50 NC_003529.1 + 112689 0.69 0.984955
Target:  5'- -aGAUCGUuuGCaa--CAAAGCCACCg -3'
miRNA:   3'- ggCUAGUAggCGacucGUUUUGGUGG- -5'
14703 5' -50 NC_003529.1 + 52116 0.69 0.98306
Target:  5'- aCGAU-GUCUGCUGuacGCAAAACCuuguACCc -3'
miRNA:   3'- gGCUAgUAGGCGACu--CGUUUUGG----UGG- -5'
14703 5' -50 NC_003529.1 + 119903 0.69 0.98306
Target:  5'- gCGGUCGaCCGCcugccgugccaUGuGUAAAGCCACUu -3'
miRNA:   3'- gGCUAGUaGGCG-----------ACuCGUUUUGGUGG- -5'
14703 5' -50 NC_003529.1 + 29965 0.69 0.976295
Target:  5'- aCUGucUCGUUCGgUGAGC-GGACCGCUg -3'
miRNA:   3'- -GGCu-AGUAGGCgACUCGuUUUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.