miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1472 3' -58.5 NC_001335.1 + 26604 0.67 0.473133
Target:  5'- aCGGCcUUGAGcCGGCCGUCggCGAUGUa -3'
miRNA:   3'- -GCCGuAGUUCcGUCGGCGGa-GCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 1679 0.67 0.472141
Target:  5'- uCGGCAaucgaguUCAAcGGCgcuccgacAGCCgGCCUCGGCa- -3'
miRNA:   3'- -GCCGU-------AGUU-CCG--------UCGG-CGGAGCUGcg -5'
1472 3' -58.5 NC_001335.1 + 15330 0.67 0.467198
Target:  5'- cCGGCuccucgucCAAGGCGGCgaucagcuucuuggGCUUCGugGCg -3'
miRNA:   3'- -GCCGua------GUUCCGUCGg-------------CGGAGCugCG- -5'
1472 3' -58.5 NC_001335.1 + 48781 0.67 0.463263
Target:  5'- gCGGCGcaagccUCGAGGUGGUCGagCagGACGCg -3'
miRNA:   3'- -GCCGU------AGUUCCGUCGGCg-GagCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 8788 0.67 0.462283
Target:  5'- -aGCGUCGGuGUAGCCcagugguGCCUCGAUGUc -3'
miRNA:   3'- gcCGUAGUUcCGUCGG-------CGGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 5510 0.67 0.453503
Target:  5'- gGGCAUCGuccugaucuGG-GGCgGgCUCGACGCu -3'
miRNA:   3'- gCCGUAGUu--------CCgUCGgCgGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 47852 0.67 0.453503
Target:  5'- gGGCAUCAccGCAGCaaCGCCgCGAuccuUGCu -3'
miRNA:   3'- gCCGUAGUucCGUCG--GCGGaGCU----GCG- -5'
1472 3' -58.5 NC_001335.1 + 41889 0.67 0.453503
Target:  5'- aCGGCAgcUCGuauccGGguGCCGCUguacgggGACGCu -3'
miRNA:   3'- -GCCGU--AGUu----CCguCGGCGGag-----CUGCG- -5'
1472 3' -58.5 NC_001335.1 + 9203 0.67 0.453503
Target:  5'- uCGGCGUCGAcuccgagaccGGcCAGaCGCUguUCGAUGCg -3'
miRNA:   3'- -GCCGUAGUU----------CC-GUCgGCGG--AGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 7206 0.67 0.443856
Target:  5'- uGGCcguAUUGAGGCAG-CGaCCUCGAgcccCGCg -3'
miRNA:   3'- gCCG---UAGUUCCGUCgGC-GGAGCU----GCG- -5'
1472 3' -58.5 NC_001335.1 + 7287 0.68 0.434325
Target:  5'- gGGC-UCGAGGUcGCUGCCUCaauACGg -3'
miRNA:   3'- gCCGuAGUUCCGuCGGCGGAGc--UGCg -5'
1472 3' -58.5 NC_001335.1 + 16688 0.68 0.434325
Target:  5'- aCGGCGuguUCGAGGguGCCaugcaaggGCUUUcgcaGACGCu -3'
miRNA:   3'- -GCCGU---AGUUCCguCGG--------CGGAG----CUGCG- -5'
1472 3' -58.5 NC_001335.1 + 45325 0.68 0.433378
Target:  5'- aGGaguaCAUCAAGGCuacggguucgucgGGCCGCUgUCGGCGa -3'
miRNA:   3'- gCC----GUAGUUCCG-------------UCGGCGG-AGCUGCg -5'
1472 3' -58.5 NC_001335.1 + 43156 0.68 0.424914
Target:  5'- gGGCAUCAAGGCgaAGCCcacugcGCCcuaCGACc- -3'
miRNA:   3'- gCCGUAGUUCCG--UCGG------CGGa--GCUGcg -5'
1472 3' -58.5 NC_001335.1 + 4972 0.68 0.424914
Target:  5'- aGGCGUCGAcugggaguccacGGCAaCCGCaaCGGCGUa -3'
miRNA:   3'- gCCGUAGUU------------CCGUcGGCGgaGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 27274 0.68 0.415625
Target:  5'- uGGUuuUCcAGGUAcGCCucggcgagguugGCCUCGGCGCg -3'
miRNA:   3'- gCCGu-AGuUCCGU-CGG------------CGGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 23484 0.68 0.415625
Target:  5'- uCGGUAUCAAcGGgAGUC-CUUCGACGg -3'
miRNA:   3'- -GCCGUAGUU-CCgUCGGcGGAGCUGCg -5'
1472 3' -58.5 NC_001335.1 + 19508 0.68 0.415625
Target:  5'- aGGCcgCGcAGGCggaAGUCGCCaUCG-CGCa -3'
miRNA:   3'- gCCGuaGU-UCCG---UCGGCGG-AGCuGCG- -5'
1472 3' -58.5 NC_001335.1 + 1353 0.68 0.415625
Target:  5'- gGGUGUUggGGCuGCUGCCacCGcCGCc -3'
miRNA:   3'- gCCGUAGuuCCGuCGGCGGa-GCuGCG- -5'
1472 3' -58.5 NC_001335.1 + 43069 0.68 0.397427
Target:  5'- aGGUcgUAGGGCgcagugGGCuuCGCCUUGAUGCc -3'
miRNA:   3'- gCCGuaGUUCCG------UCG--GCGGAGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.