miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1472 3' -58.5 NC_001335.1 + 16128 0.66 0.544871
Target:  5'- uGGCAagUCGuuccuGGGCcucacacgAGCCGCCUgGAUagGCg -3'
miRNA:   3'- gCCGU--AGU-----UCCG--------UCGGCGGAgCUG--CG- -5'
1472 3' -58.5 NC_001335.1 + 26604 0.67 0.473133
Target:  5'- aCGGCcUUGAGcCGGCCGUCggCGAUGUa -3'
miRNA:   3'- -GCCGuAGUUCcGUCGGCGGa-GCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 27274 0.68 0.415625
Target:  5'- uGGUuuUCcAGGUAcGCCucggcgagguugGCCUCGGCGCg -3'
miRNA:   3'- gCCGu-AGuUCCGU-CGG------------CGGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 25128 0.66 0.513609
Target:  5'- uGGCG-Cu-GGCGGCUGCCUUcuuCGCc -3'
miRNA:   3'- gCCGUaGuuCCGUCGGCGGAGcu-GCG- -5'
1472 3' -58.5 NC_001335.1 + 28933 0.66 0.544871
Target:  5'- gCGaGCuGUCAccGGCAGCCGCCggcccaucgcgUUGACGa -3'
miRNA:   3'- -GC-CG-UAGUu-CCGUCGGCGG-----------AGCUGCg -5'
1472 3' -58.5 NC_001335.1 + 27174 0.66 0.543818
Target:  5'- uGGCggCAAGGCcgaugauGGCUGCUgCGAUGg -3'
miRNA:   3'- gCCGuaGUUCCG-------UCGGCGGaGCUGCg -5'
1472 3' -58.5 NC_001335.1 + 17740 0.68 0.397427
Target:  5'- aCGGCAUgGAGGCAGgguucaagcCCGUCaUCGaACGg -3'
miRNA:   3'- -GCCGUAgUUCCGUC---------GGCGG-AGC-UGCg -5'
1472 3' -58.5 NC_001335.1 + 43069 0.68 0.397427
Target:  5'- aGGUcgUAGGGCgcagugGGCuuCGCCUUGAUGCc -3'
miRNA:   3'- gCCGuaGUUCCG------UCG--GCGGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 42325 0.67 0.480103
Target:  5'- aGGCGUCGugaaucggccgaccGGcGCgAGCCGCgugcguCUCGGCGUc -3'
miRNA:   3'- gCCGUAGU--------------UC-CG-UCGGCG------GAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 5973 0.66 0.513609
Target:  5'- gCGGUAUCGgcAGGCAGaCCagGCC-CGA-GCg -3'
miRNA:   3'- -GCCGUAGU--UCCGUC-GG--CGGaGCUgCG- -5'
1472 3' -58.5 NC_001335.1 + 4916 0.74 0.165641
Target:  5'- cCGGCuugaucggCAAGGCcgcuGGcCCGCCUCGGgGCa -3'
miRNA:   3'- -GCCGua------GUUCCG----UC-GGCGGAGCUgCG- -5'
1472 3' -58.5 NC_001335.1 + 47852 0.67 0.453503
Target:  5'- gGGCAUCAccGCAGCaaCGCCgCGAuccuUGCu -3'
miRNA:   3'- gCCGUAGUucCGUCG--GCGGaGCU----GCG- -5'
1472 3' -58.5 NC_001335.1 + 41889 0.67 0.453503
Target:  5'- aCGGCAgcUCGuauccGGguGCCGCUguacgggGACGCu -3'
miRNA:   3'- -GCCGU--AGUu----CCguCGGCGGag-----CUGCG- -5'
1472 3' -58.5 NC_001335.1 + 8788 0.67 0.462283
Target:  5'- -aGCGUCGGuGUAGCCcagugguGCCUCGAUGUc -3'
miRNA:   3'- gcCGUAGUUcCGUCGG-------CGGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 51240 0.69 0.354237
Target:  5'- uCGGCAUUcgggAGGGUAGCU--CUUGGCGCg -3'
miRNA:   3'- -GCCGUAG----UUCCGUCGGcgGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 14804 0.69 0.346006
Target:  5'- aGGuCAUCGauGGGCAGCucaauCGCgUCGuCGCg -3'
miRNA:   3'- gCC-GUAGU--UCCGUCG-----GCGgAGCuGCG- -5'
1472 3' -58.5 NC_001335.1 + 7684 0.7 0.314467
Target:  5'- uCGGCAgcCAGGuGgAGUCGCCUCGG-GCg -3'
miRNA:   3'- -GCCGUa-GUUC-CgUCGGCGGAGCUgCG- -5'
1472 3' -58.5 NC_001335.1 + 13925 0.71 0.258036
Target:  5'- cCGGaggAUCGGGGCcGCUacuGCCUgGACGCg -3'
miRNA:   3'- -GCCg--UAGUUCCGuCGG---CGGAgCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 25206 0.72 0.215696
Target:  5'- gGGCgAagAAGGCAGCCGCCagCGccaucACGCu -3'
miRNA:   3'- gCCG-UagUUCCGUCGGCGGa-GC-----UGCG- -5'
1472 3' -58.5 NC_001335.1 + 8709 0.74 0.179452
Target:  5'- uCGGCAUCGccgAGGCGGaaaC-CCUCGACGg -3'
miRNA:   3'- -GCCGUAGU---UCCGUCg--GcGGAGCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.