miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1472 3' -58.5 NC_001335.1 + 16289 1.11 0.000299
Target:  5'- aCGGCAUCAAGGCAGCCGCCUCGACGCu -3'
miRNA:   3'- -GCCGUAGUUCCGUCGGCGGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 48781 0.67 0.463263
Target:  5'- gCGGCGcaagccUCGAGGUGGUCGagCagGACGCg -3'
miRNA:   3'- -GCCGU------AGUUCCGUCGGCg-GagCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 26604 0.67 0.473133
Target:  5'- aCGGCcUUGAGcCGGCCGUCggCGAUGUa -3'
miRNA:   3'- -GCCGuAGUUCcGUCGGCGGa-GCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 28933 0.66 0.544871
Target:  5'- gCGaGCuGUCAccGGCAGCCGCCggcccaucgcgUUGACGa -3'
miRNA:   3'- -GC-CG-UAGUu-CCGUCGGCGG-----------AGCUGCg -5'
1472 3' -58.5 NC_001335.1 + 17366 0.72 0.215696
Target:  5'- gGGUGUCuccaucGGCGGCgCGCUcaUCGGCGCg -3'
miRNA:   3'- gCCGUAGuu----CCGUCG-GCGG--AGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 8625 0.72 0.221359
Target:  5'- aGGcCGUCgAGGGUuuCCGCCUCGGCGa -3'
miRNA:   3'- gCC-GUAG-UUCCGucGGCGGAGCUGCg -5'
1472 3' -58.5 NC_001335.1 + 47658 0.7 0.329959
Target:  5'- uCGGCGUaguGGGCAGCuuggauuacugCGCCUCG-UGUg -3'
miRNA:   3'- -GCCGUAgu-UCCGUCG-----------GCGGAGCuGCG- -5'
1472 3' -58.5 NC_001335.1 + 16328 0.69 0.346006
Target:  5'- uGGagacgGUCAAGGCcGCUGucuCCUCGACGUu -3'
miRNA:   3'- gCCg----UAGUUCCGuCGGC---GGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 27274 0.68 0.415625
Target:  5'- uGGUuuUCcAGGUAcGCCucggcgagguugGCCUCGGCGCg -3'
miRNA:   3'- gCCGu-AGuUCCGU-CGG------------CGGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 9203 0.67 0.453503
Target:  5'- uCGGCGUCGAcuccgagaccGGcCAGaCGCUguUCGAUGCg -3'
miRNA:   3'- -GCCGUAGUU----------CC-GUCgGCGG--AGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 16688 0.68 0.434325
Target:  5'- aCGGCGuguUCGAGGguGCCaugcaaggGCUUUcgcaGACGCu -3'
miRNA:   3'- -GCCGU---AGUUCCguCGG--------CGGAG----CUGCG- -5'
1472 3' -58.5 NC_001335.1 + 17740 0.68 0.397427
Target:  5'- aCGGCAUgGAGGCAGgguucaagcCCGUCaUCGaACGg -3'
miRNA:   3'- -GCCGUAgUUCCGUC---------GGCGG-AGC-UGCg -5'
1472 3' -58.5 NC_001335.1 + 14689 0.75 0.148714
Target:  5'- gGGCAUCAcgcccacaAGGCuggaguucGCCGCgaCGACGCg -3'
miRNA:   3'- gCCGUAGU--------UCCGu-------CGGCGgaGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 7206 0.67 0.443856
Target:  5'- uGGCcguAUUGAGGCAG-CGaCCUCGAgcccCGCg -3'
miRNA:   3'- gCCG---UAGUUCCGUCgGC-GGAGCU----GCG- -5'
1472 3' -58.5 NC_001335.1 + 2122 0.74 0.161254
Target:  5'- uGGCuGUCGAGGUGGCC-CCUCgGGCGUu -3'
miRNA:   3'- gCCG-UAGUUCCGUCGGcGGAG-CUGCG- -5'
1472 3' -58.5 NC_001335.1 + 43069 0.68 0.397427
Target:  5'- aGGUcgUAGGGCgcagugGGCuuCGCCUUGAUGCc -3'
miRNA:   3'- gCCGuaGUUCCG------UCG--GCGGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 5510 0.67 0.453503
Target:  5'- gGGCAUCGuccugaucuGG-GGCgGgCUCGACGCu -3'
miRNA:   3'- gCCGUAGUu--------CCgUCGgCgGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 1679 0.67 0.472141
Target:  5'- uCGGCAaucgaguUCAAcGGCgcuccgacAGCCgGCCUCGGCa- -3'
miRNA:   3'- -GCCGU-------AGUU-CCG--------UCGG-CGGAGCUGcg -5'
1472 3' -58.5 NC_001335.1 + 4085 0.74 0.165641
Target:  5'- cCGGCG---AGGCAGCCGgCggCGAUGCa -3'
miRNA:   3'- -GCCGUaguUCCGUCGGCgGa-GCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 59 0.72 0.229499
Target:  5'- cCGGCAcagaaaccacucacaUCAGGGCuGUgCGCCUCcagGGCGCg -3'
miRNA:   3'- -GCCGU---------------AGUUCCGuCG-GCGGAG---CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.