miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1472 3' -58.5 NC_001335.1 + 16289 1.11 0.000299
Target:  5'- aCGGCAUCAAGGCAGCCGCCUCGACGCu -3'
miRNA:   3'- -GCCGUAGUUCCGUCGGCGGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 16372 0.89 0.013544
Target:  5'- gGGCAgcgUCGAGGCGGCUGCCUUGAUGCc -3'
miRNA:   3'- gCCGU---AGUUCCGUCGGCGGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 14689 0.75 0.148714
Target:  5'- gGGCAUCAcgcccacaAGGCuggaguucGCCGCgaCGACGCg -3'
miRNA:   3'- gCCGUAGU--------UCCGu-------CGGCGgaGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 8904 0.75 0.152792
Target:  5'- uCGGCGUgCAuucGGGUGGgCGgCUCGACGCg -3'
miRNA:   3'- -GCCGUA-GU---UCCGUCgGCgGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 2122 0.74 0.161254
Target:  5'- uGGCuGUCGAGGUGGCC-CCUCgGGCGUu -3'
miRNA:   3'- gCCG-UAGUUCCGUCGGcGGAG-CUGCG- -5'
1472 3' -58.5 NC_001335.1 + 4085 0.74 0.165641
Target:  5'- cCGGCG---AGGCAGCCGgCggCGAUGCa -3'
miRNA:   3'- -GCCGUaguUCCGUCGGCgGa-GCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 4916 0.74 0.165641
Target:  5'- cCGGCuugaucggCAAGGCcgcuGGcCCGCCUCGGgGCa -3'
miRNA:   3'- -GCCGua------GUUCCG----UC-GGCGGAGCUgCG- -5'
1472 3' -58.5 NC_001335.1 + 8709 0.74 0.179452
Target:  5'- uCGGCAUCGccgAGGCGGaaaC-CCUCGACGg -3'
miRNA:   3'- -GCCGUAGU---UCCGUCg--GcGGAGCUGCg -5'
1472 3' -58.5 NC_001335.1 + 25206 0.72 0.215696
Target:  5'- gGGCgAagAAGGCAGCCGCCagCGccaucACGCu -3'
miRNA:   3'- gCCG-UagUUCCGUCGGCGGa-GC-----UGCG- -5'
1472 3' -58.5 NC_001335.1 + 17366 0.72 0.215696
Target:  5'- gGGUGUCuccaucGGCGGCgCGCUcaUCGGCGCg -3'
miRNA:   3'- gCCGUAGuu----CCGUCG-GCGG--AGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 8625 0.72 0.221359
Target:  5'- aGGcCGUCgAGGGUuuCCGCCUCGGCGa -3'
miRNA:   3'- gCC-GUAG-UUCCGucGGCGGAGCUGCg -5'
1472 3' -58.5 NC_001335.1 + 59 0.72 0.229499
Target:  5'- cCGGCAcagaaaccacucacaUCAGGGCuGUgCGCCUCcagGGCGCg -3'
miRNA:   3'- -GCCGU---------------AGUUCCGuCG-GCGGAG---CUGCG- -5'
1472 3' -58.5 NC_001335.1 + 13925 0.71 0.258036
Target:  5'- cCGGaggAUCGGGGCcGCUacuGCCUgGACGCg -3'
miRNA:   3'- -GCCg--UAGUUCCGuCGG---CGGAgCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 7684 0.7 0.314467
Target:  5'- uCGGCAgcCAGGuGgAGUCGCCUCGG-GCg -3'
miRNA:   3'- -GCCGUa-GUUC-CgUCGGCGGAGCUgCG- -5'
1472 3' -58.5 NC_001335.1 + 47658 0.7 0.329959
Target:  5'- uCGGCGUaguGGGCAGCuuggauuacugCGCCUCG-UGUg -3'
miRNA:   3'- -GCCGUAgu-UCCGUCG-----------GCGGAGCuGCG- -5'
1472 3' -58.5 NC_001335.1 + 16328 0.69 0.346006
Target:  5'- uGGagacgGUCAAGGCcGCUGucuCCUCGACGUu -3'
miRNA:   3'- gCCg----UAGUUCCGuCGGC---GGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 14804 0.69 0.346006
Target:  5'- aGGuCAUCGauGGGCAGCucaauCGCgUCGuCGCg -3'
miRNA:   3'- gCC-GUAGU--UCCGUCG-----GCGgAGCuGCG- -5'
1472 3' -58.5 NC_001335.1 + 381 0.69 0.354237
Target:  5'- cCGGCccuUCAAGGcCGGUcuuuagaugagCGCCUgGugGCg -3'
miRNA:   3'- -GCCGu--AGUUCC-GUCG-----------GCGGAgCugCG- -5'
1472 3' -58.5 NC_001335.1 + 51240 0.69 0.354237
Target:  5'- uCGGCAUUcgggAGGGUAGCU--CUUGGCGCg -3'
miRNA:   3'- -GCCGUAG----UUCCGUCGGcgGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 48307 0.69 0.379749
Target:  5'- gCGGCAUCGuAGGCgAGCUGaUCUCGcuucuccCGCa -3'
miRNA:   3'- -GCCGUAGU-UCCG-UCGGC-GGAGCu------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.