miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1472 3' -58.5 NC_001335.1 + 59 0.72 0.229499
Target:  5'- cCGGCAcagaaaccacucacaUCAGGGCuGUgCGCCUCcagGGCGCg -3'
miRNA:   3'- -GCCGU---------------AGUUCCGuCG-GCGGAG---CUGCG- -5'
1472 3' -58.5 NC_001335.1 + 381 0.69 0.354237
Target:  5'- cCGGCccuUCAAGGcCGGUcuuuagaugagCGCCUgGugGCg -3'
miRNA:   3'- -GCCGu--AGUUCC-GUCG-----------GCGGAgCugCG- -5'
1472 3' -58.5 NC_001335.1 + 1243 0.66 0.50335
Target:  5'- aGGCGUCAccgguGGCGGCggaaguggaGCCggCGGCGg -3'
miRNA:   3'- gCCGUAGUu----CCGUCGg--------CGGa-GCUGCg -5'
1472 3' -58.5 NC_001335.1 + 1353 0.68 0.415625
Target:  5'- gGGUGUUggGGCuGCUGCCacCGcCGCc -3'
miRNA:   3'- gCCGUAGuuCCGuCGGCGGa-GCuGCG- -5'
1472 3' -58.5 NC_001335.1 + 1667 0.66 0.523953
Target:  5'- gGGUGUCGccaccGGCugagaAGCCGaCCUCGAacaGCg -3'
miRNA:   3'- gCCGUAGUu----CCG-----UCGGC-GGAGCUg--CG- -5'
1472 3' -58.5 NC_001335.1 + 1679 0.67 0.472141
Target:  5'- uCGGCAaucgaguUCAAcGGCgcuccgacAGCCgGCCUCGGCa- -3'
miRNA:   3'- -GCCGU-------AGUU-CCG--------UCGG-CGGAGCUGcg -5'
1472 3' -58.5 NC_001335.1 + 2122 0.74 0.161254
Target:  5'- uGGCuGUCGAGGUGGCC-CCUCgGGCGUu -3'
miRNA:   3'- gCCG-UAGUUCCGUCGGcGGAG-CUGCG- -5'
1472 3' -58.5 NC_001335.1 + 2532 0.66 0.513609
Target:  5'- aCGGCAagAAauCAGCCGCCgagGGCGUa -3'
miRNA:   3'- -GCCGUagUUccGUCGGCGGag-CUGCG- -5'
1472 3' -58.5 NC_001335.1 + 4085 0.74 0.165641
Target:  5'- cCGGCG---AGGCAGCCGgCggCGAUGCa -3'
miRNA:   3'- -GCCGUaguUCCGUCGGCgGa-GCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 4916 0.74 0.165641
Target:  5'- cCGGCuugaucggCAAGGCcgcuGGcCCGCCUCGGgGCa -3'
miRNA:   3'- -GCCGua------GUUCCG----UC-GGCGGAGCUgCG- -5'
1472 3' -58.5 NC_001335.1 + 4972 0.68 0.424914
Target:  5'- aGGCGUCGAcugggaguccacGGCAaCCGCaaCGGCGUa -3'
miRNA:   3'- gCCGUAGUU------------CCGUcGGCGgaGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 5510 0.67 0.453503
Target:  5'- gGGCAUCGuccugaucuGG-GGCgGgCUCGACGCu -3'
miRNA:   3'- gCCGUAGUu--------CCgUCGgCgGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 5973 0.66 0.513609
Target:  5'- gCGGUAUCGgcAGGCAGaCCagGCC-CGA-GCg -3'
miRNA:   3'- -GCCGUAGU--UCCGUC-GG--CGGaGCUgCG- -5'
1472 3' -58.5 NC_001335.1 + 7206 0.67 0.443856
Target:  5'- uGGCcguAUUGAGGCAG-CGaCCUCGAgcccCGCg -3'
miRNA:   3'- gCCG---UAGUUCCGUCgGC-GGAGCU----GCG- -5'
1472 3' -58.5 NC_001335.1 + 7287 0.68 0.434325
Target:  5'- gGGC-UCGAGGUcGCUGCCUCaauACGg -3'
miRNA:   3'- gCCGuAGUUCCGuCGGCGGAGc--UGCg -5'
1472 3' -58.5 NC_001335.1 + 7684 0.7 0.314467
Target:  5'- uCGGCAgcCAGGuGgAGUCGCCUCGG-GCg -3'
miRNA:   3'- -GCCGUa-GUUC-CgUCGGCGGAGCUgCG- -5'
1472 3' -58.5 NC_001335.1 + 8625 0.72 0.221359
Target:  5'- aGGcCGUCgAGGGUuuCCGCCUCGGCGa -3'
miRNA:   3'- gCC-GUAG-UUCCGucGGCGGAGCUGCg -5'
1472 3' -58.5 NC_001335.1 + 8709 0.74 0.179452
Target:  5'- uCGGCAUCGccgAGGCGGaaaC-CCUCGACGg -3'
miRNA:   3'- -GCCGUAGU---UCCGUCg--GcGGAGCUGCg -5'
1472 3' -58.5 NC_001335.1 + 8788 0.67 0.462283
Target:  5'- -aGCGUCGGuGUAGCCcagugguGCCUCGAUGUc -3'
miRNA:   3'- gcCGUAGUUcCGUCGG-------CGGAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 8904 0.75 0.152792
Target:  5'- uCGGCGUgCAuucGGGUGGgCGgCUCGACGCg -3'
miRNA:   3'- -GCCGUA-GU---UCCGUCgGCgGAGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.