Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1472 | 3' | -58.5 | NC_001335.1 | + | 1353 | 0.68 | 0.415625 |
Target: 5'- gGGUGUUggGGCuGCUGCCacCGcCGCc -3' miRNA: 3'- gCCGUAGuuCCGuCGGCGGa-GCuGCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 8788 | 0.67 | 0.462283 |
Target: 5'- -aGCGUCGGuGUAGCCcagugguGCCUCGAUGUc -3' miRNA: 3'- gcCGUAGUUcCGUCGG-------CGGAGCUGCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 41889 | 0.67 | 0.453503 |
Target: 5'- aCGGCAgcUCGuauccGGguGCCGCUguacgggGACGCu -3' miRNA: 3'- -GCCGU--AGUu----CCguCGGCGGag-----CUGCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 47852 | 0.67 | 0.453503 |
Target: 5'- gGGCAUCAccGCAGCaaCGCCgCGAuccuUGCu -3' miRNA: 3'- gCCGUAGUucCGUCG--GCGGaGCU----GCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 7287 | 0.68 | 0.434325 |
Target: 5'- gGGC-UCGAGGUcGCUGCCUCaauACGg -3' miRNA: 3'- gCCGuAGUUCCGuCGGCGGAGc--UGCg -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 45325 | 0.68 | 0.433378 |
Target: 5'- aGGaguaCAUCAAGGCuacggguucgucgGGCCGCUgUCGGCGa -3' miRNA: 3'- gCC----GUAGUUCCG-------------UCGGCGG-AGCUGCg -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 43156 | 0.68 | 0.424914 |
Target: 5'- gGGCAUCAAGGCgaAGCCcacugcGCCcuaCGACc- -3' miRNA: 3'- gCCGUAGUUCCG--UCGG------CGGa--GCUGcg -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 19508 | 0.68 | 0.415625 |
Target: 5'- aGGCcgCGcAGGCggaAGUCGCCaUCG-CGCa -3' miRNA: 3'- gCCGuaGU-UCCG---UCGGCGG-AGCuGCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 23484 | 0.68 | 0.415625 |
Target: 5'- uCGGUAUCAAcGGgAGUC-CUUCGACGg -3' miRNA: 3'- -GCCGUAGUU-CCgUCGGcGGAGCUGCg -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 15330 | 0.67 | 0.467198 |
Target: 5'- cCGGCuccucgucCAAGGCGGCgaucagcuucuuggGCUUCGugGCg -3' miRNA: 3'- -GCCGua------GUUCCGUCGg-------------CGGAGCugCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 11489 | 0.67 | 0.47711 |
Target: 5'- gGGC-UCGAGGUAGCCcucgaacaucgagucGCCggUCuGCGCg -3' miRNA: 3'- gCCGuAGUUCCGUCGG---------------CGG--AGcUGCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 24909 | 0.67 | 0.483107 |
Target: 5'- uCGaGCAg-AAGGCAGCCGaugagcgCGACGUa -3' miRNA: 3'- -GC-CGUagUUCCGUCGGCgga----GCUGCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 19924 | 0.66 | 0.544871 |
Target: 5'- uGGgGUCAucAGGCAGCguccacaagcuCGUCUCGA-GCc -3' miRNA: 3'- gCCgUAGU--UCCGUCG-----------GCGGAGCUgCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 26227 | 0.66 | 0.544871 |
Target: 5'- aGGCccCGAGGCgcggguucuGGCCGCgagacagguacUUCGGCGUg -3' miRNA: 3'- gCCGuaGUUCCG---------UCGGCG-----------GAGCUGCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 22233 | 0.66 | 0.534376 |
Target: 5'- uCGGCGaacuUCAGGaacaGCgGGCCGUCUUGgaGCGCg -3' miRNA: 3'- -GCCGU----AGUUC----CG-UCGGCGGAGC--UGCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 1667 | 0.66 | 0.523953 |
Target: 5'- gGGUGUCGccaccGGCugagaAGCCGaCCUCGAacaGCg -3' miRNA: 3'- gCCGUAGUu----CCG-----UCGGC-GGAGCUg--CG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 16415 | 0.66 | 0.523953 |
Target: 5'- uGGaaCGUCGAGGagaCAGCgGCCUUGAcCGUc -3' miRNA: 3'- gCC--GUAGUUCC---GUCGgCGGAGCU-GCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 5973 | 0.66 | 0.513609 |
Target: 5'- gCGGUAUCGgcAGGCAGaCCagGCC-CGA-GCg -3' miRNA: 3'- -GCCGUAGU--UCCGUC-GG--CGGaGCUgCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 51544 | 0.67 | 0.493181 |
Target: 5'- cCGGUgagAUCAggcGGGUAGCgcauuaCGCCagCGGCGCu -3' miRNA: 3'- -GCCG---UAGU---UCCGUCG------GCGGa-GCUGCG- -5' |
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1472 | 3' | -58.5 | NC_001335.1 | + | 12544 | 0.67 | 0.492169 |
Target: 5'- gCGGUuucCGGGGCaccuuccAGCCGCCa-GugGCg -3' miRNA: 3'- -GCCGua-GUUCCG-------UCGGCGGagCugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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