miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1473 5' -54.2 NC_001335.1 + 41576 0.66 0.710872
Target:  5'- aUCCgagGGUCgGCGGgGGAUCCGcuACc -3'
miRNA:   3'- gAGGa--CCAGaCGUCgUCUAGGUcuUG- -5'
1473 5' -54.2 NC_001335.1 + 4704 0.66 0.710872
Target:  5'- -gCCUGGU--GCuGCAGA-CCGGGGCu -3'
miRNA:   3'- gaGGACCAgaCGuCGUCUaGGUCUUG- -5'
1473 5' -54.2 NC_001335.1 + 36831 0.66 0.710872
Target:  5'- uUCCUGGagccgCUGCGcCAGGUCUAcGACg -3'
miRNA:   3'- gAGGACCa----GACGUcGUCUAGGUcUUG- -5'
1473 5' -54.2 NC_001335.1 + 26263 0.66 0.700923
Target:  5'- gUCCcGGUCgggcgcagucaagcgGCAGCGGGcUCCAGGc- -3'
miRNA:   3'- gAGGaCCAGa--------------CGUCGUCU-AGGUCUug -5'
1473 5' -54.2 NC_001335.1 + 40130 0.66 0.699814
Target:  5'- uCUCCgGGUCgauccGCuuGUGGGUCCAGAc- -3'
miRNA:   3'- -GAGGaCCAGa----CGu-CGUCUAGGUCUug -5'
1473 5' -54.2 NC_001335.1 + 12557 0.66 0.699814
Target:  5'- gUCUUGGUgUUGC-GCGGuuUCCGGGGCa -3'
miRNA:   3'- gAGGACCA-GACGuCGUCu-AGGUCUUG- -5'
1473 5' -54.2 NC_001335.1 + 22536 0.67 0.677501
Target:  5'- gUCCUGGUCUGggacgcgccCGGUgAGGgcuccCCAGAACu -3'
miRNA:   3'- gAGGACCAGAC---------GUCG-UCUa----GGUCUUG- -5'
1473 5' -54.2 NC_001335.1 + 47143 0.67 0.66627
Target:  5'- uCUUCUGGUU--CAGCGGAUCUGGucGACg -3'
miRNA:   3'- -GAGGACCAGacGUCGUCUAGGUC--UUG- -5'
1473 5' -54.2 NC_001335.1 + 24085 0.67 0.64372
Target:  5'- gCUCCUGG-CgGCGGCGGggCUGGuGCc -3'
miRNA:   3'- -GAGGACCaGaCGUCGUCuaGGUCuUG- -5'
1473 5' -54.2 NC_001335.1 + 20205 0.67 0.64372
Target:  5'- gUCCcGGagcgggaucuUCUGCAGCAGGUCUucGACa -3'
miRNA:   3'- gAGGaCC----------AGACGUCGUCUAGGucUUG- -5'
1473 5' -54.2 NC_001335.1 + 15524 0.68 0.609837
Target:  5'- gUCgUGGUggGCAGCAGuaCCGGGGCu -3'
miRNA:   3'- gAGgACCAgaCGUCGUCuaGGUCUUG- -5'
1473 5' -54.2 NC_001335.1 + 5899 0.68 0.609837
Target:  5'- -gCCUGGUCUGCcuGCcGAUaccgcaCGGGACg -3'
miRNA:   3'- gaGGACCAGACGu-CGuCUAg-----GUCUUG- -5'
1473 5' -54.2 NC_001335.1 + 6879 0.69 0.540671
Target:  5'- -gCCUGGUCcucuggugguacGCAGUAGAUgaCCAGGGCc -3'
miRNA:   3'- gaGGACCAGa-----------CGUCGUCUA--GGUCUUG- -5'
1473 5' -54.2 NC_001335.1 + 36758 0.69 0.531915
Target:  5'- -aCCUGG-C-GCAGCGGcUCCAGGAa -3'
miRNA:   3'- gaGGACCaGaCGUCGUCuAGGUCUUg -5'
1473 5' -54.2 NC_001335.1 + 41492 0.69 0.531915
Target:  5'- gUCCUGGUCUGCGcCGGccCCGGcACc -3'
miRNA:   3'- gAGGACCAGACGUcGUCuaGGUCuUG- -5'
1473 5' -54.2 NC_001335.1 + 11859 0.69 0.521042
Target:  5'- cCUCCUugguGGUCUGC-GCuaggaAGGUCgGGAACg -3'
miRNA:   3'- -GAGGA----CCAGACGuCG-----UCUAGgUCUUG- -5'
1473 5' -54.2 NC_001335.1 + 21535 0.7 0.468123
Target:  5'- uCUCCUGGUCUGUgAGCuugcGAaugUCUGGAAUa -3'
miRNA:   3'- -GAGGACCAGACG-UCGu---CU---AGGUCUUG- -5'
1473 5' -54.2 NC_001335.1 + 16566 0.73 0.336807
Target:  5'- gUUCUGGaUCUGCuGCAGA-CCAGGAg -3'
miRNA:   3'- gAGGACC-AGACGuCGUCUaGGUCUUg -5'
1473 5' -54.2 NC_001335.1 + 4775 0.77 0.193837
Target:  5'- -cCCcGGUCUGCAGCAccaggCCAGAGCa -3'
miRNA:   3'- gaGGaCCAGACGUCGUcua--GGUCUUG- -5'
1473 5' -54.2 NC_001335.1 + 16489 1.1 0.00078
Target:  5'- gCUCCUGGUCUGCAGCAGAUCCAGAACa -3'
miRNA:   3'- -GAGGACCAGACGUCGUCUAGGUCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.