miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14819 5' -59.3 NC_003607.1 + 4614 0.72 0.022626
Target:  5'- gUCCCCCCUggugccgguaugcaCGCUAccaugucauaccuaGCCAgacACACCACCUu -3'
miRNA:   3'- -GGGGGGGA--------------GCGGU--------------UGGU---UGUGGUGGG- -5'
14819 5' -59.3 NC_003607.1 + 2465 0.71 0.028341
Target:  5'- uCCaCCCCCUgGCCcACCAAacggucccccUGCCgGCCCa -3'
miRNA:   3'- -GG-GGGGGAgCGGuUGGUU----------GUGG-UGGG- -5'
14819 5' -59.3 NC_003607.1 + 2538 0.71 0.029323
Target:  5'- gCCCCCgUCcCCAcuGCCAuccacGCACCcCCCg -3'
miRNA:   3'- gGGGGGgAGcGGU--UGGU-----UGUGGuGGG- -5'
14819 5' -59.3 NC_003607.1 + 990 0.68 0.047139
Target:  5'- gCCCCCUCUUGCUcuuGCCc---UCACCCg -3'
miRNA:   3'- -GGGGGGGAGCGGu--UGGuuguGGUGGG- -5'
14819 5' -59.3 NC_003607.1 + 1522 0.67 0.065729
Target:  5'- gUCgCCCCUUacuuuuggauugaGCCGACCGGCuugauCC-CCCa -3'
miRNA:   3'- -GGgGGGGAG-------------CGGUUGGUUGu----GGuGGG- -5'
14819 5' -59.3 NC_003607.1 + 2196 0.66 0.07535
Target:  5'- aCCCucacuagugCCCCUgCGCCGAuuCCGGCua-GCCCg -3'
miRNA:   3'- -GGG---------GGGGA-GCGGUU--GGUUGuggUGGG- -5'
14819 5' -59.3 NC_003607.1 + 214 1.09 0.000012
Target:  5'- gCCCCCCCUCGCCAACCAACACCACCUu -3'
miRNA:   3'- -GGGGGGGAGCGGUUGGUUGUGGUGGG- -5'
14819 5' -59.3 NC_003607.1 + 4862 0.74 0.014446
Target:  5'- aCCCCUCUgccggucaguucgugUGCCAuagagaaGCCGACAgCCACCCu -3'
miRNA:   3'- gGGGGGGA---------------GCGGU-------UGGUUGU-GGUGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.