Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1484 | 5' | -55.6 | NC_001335.1 | + | 52211 | 0.66 | 0.690114 |
|
Target: 5'- --uGCGAUGcGAGAGCGCcgCggcacgCGGCUa -3' miRNA: 3'- cagUGCUAC-CUCUUGCGa-Ga-----GCCGGa -5' |
|||||||
| 1484 | 5' | -55.6 | NC_001335.1 | + | 37790 | 0.66 | 0.668191 |
|
Target: 5'- cUCACGu--GAGAACGCUgUUCGcGCCg -3' miRNA: 3'- cAGUGCuacCUCUUGCGA-GAGC-CGGa -5' |
|||||||
| 1484 | 5' | -55.6 | NC_001335.1 | + | 10206 | 0.67 | 0.620703 |
|
Target: 5'- uUCGCGAagUGGAGAugGCagcacgccgacagaUCaUCGGCgCUg -3' miRNA: 3'- cAGUGCU--ACCUCUugCG--------------AG-AGCCG-GA- -5' |
|||||||
| 1484 | 5' | -55.6 | NC_001335.1 | + | 7853 | 0.67 | 0.601936 |
|
Target: 5'- aGUCcaACGAcUGGAccGCGCUCgUCGGCUg -3' miRNA: 3'- -CAG--UGCU-ACCUcuUGCGAG-AGCCGGa -5' |
|||||||
| 1484 | 5' | -55.6 | NC_001335.1 | + | 19964 | 0.67 | 0.59863 |
|
Target: 5'- gGUCACGAUGGuguucagccgguucGGGACGUUCUaCGacaccGCCa -3' miRNA: 3'- -CAGUGCUACC--------------UCUUGCGAGA-GC-----CGGa -5' |
|||||||
| 1484 | 5' | -55.6 | NC_001335.1 | + | 1694 | 0.68 | 0.569028 |
|
Target: 5'- cGUCcuCGA-GGAGGGCGCgUUCGGUCg -3' miRNA: 3'- -CAGu-GCUaCCUCUUGCGaGAGCCGGa -5' |
|||||||
| 1484 | 5' | -55.6 | NC_001335.1 | + | 12321 | 0.68 | 0.525909 |
|
Target: 5'- cGUUGCaGUGGAaGGCGUaCUCGGCCUc -3' miRNA: 3'- -CAGUGcUACCUcUUGCGaGAGCCGGA- -5' |
|||||||
| 1484 | 5' | -55.6 | NC_001335.1 | + | 41235 | 0.69 | 0.504807 |
|
Target: 5'- --gACGAgaucGAGAACGCUCU-GGCCg -3' miRNA: 3'- cagUGCUac--CUCUUGCGAGAgCCGGa -5' |
|||||||
| 1484 | 5' | -55.6 | NC_001335.1 | + | 21996 | 1.08 | 0.001032 |
|
Target: 5'- gGUCACGAUGGAGAACGCUCUCGGCCUg -3' miRNA: 3'- -CAGUGCUACCUCUUGCGAGAGCCGGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home