miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1485 5' -57.2 NC_001335.1 + 16436 0.66 0.626247
Target:  5'- uGGCCU-CGGGccuCGUGaaCAugGCCGg -3'
miRNA:   3'- gCCGGAuGUCCu--GCGCgaGUugUGGC- -5'
1485 5' -57.2 NC_001335.1 + 89 0.66 0.626247
Target:  5'- uGcGCCUcCAGGGCGCGUgaacUCccACACCc -3'
miRNA:   3'- gC-CGGAuGUCCUGCGCG----AGu-UGUGGc -5'
1485 5' -57.2 NC_001335.1 + 43736 0.66 0.62516
Target:  5'- gCGGCgUgguugccGCAGGGCaccGCGUUUcACACCGu -3'
miRNA:   3'- -GCCGgA-------UGUCCUG---CGCGAGuUGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 48351 0.66 0.615381
Target:  5'- cCGGCCgcgACaAGGuACgGCGCg-AGCGCCGc -3'
miRNA:   3'- -GCCGGa--UG-UCC-UG-CGCGagUUGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 33063 0.66 0.615381
Target:  5'- gGaGCCUGCGGGAa--GCUgGACuCCGg -3'
miRNA:   3'- gC-CGGAUGUCCUgcgCGAgUUGuGGC- -5'
1485 5' -57.2 NC_001335.1 + 7983 0.66 0.614295
Target:  5'- gGGUucgcccaCUACGacguGGugGCGUUCcGCGCCGa -3'
miRNA:   3'- gCCG-------GAUGU----CCugCGCGAGuUGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 40110 0.66 0.604529
Target:  5'- aGGCUUGCGGGGaucCGgGCUCu---CCGg -3'
miRNA:   3'- gCCGGAUGUCCU---GCgCGAGuuguGGC- -5'
1485 5' -57.2 NC_001335.1 + 19980 0.66 0.593699
Target:  5'- -aGCCgguuCGGGACGUuCUaCGACACCGc -3'
miRNA:   3'- gcCGGau--GUCCUGCGcGA-GUUGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 8588 0.66 0.593699
Target:  5'- uGGCCU-CuGGcCgGCGCUCAGCGUCGu -3'
miRNA:   3'- gCCGGAuGuCCuG-CGCGAGUUGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 30145 0.66 0.582902
Target:  5'- aGGUCga-AGGAgGCGUUCuggAGCACCa -3'
miRNA:   3'- gCCGGaugUCCUgCGCGAG---UUGUGGc -5'
1485 5' -57.2 NC_001335.1 + 13313 0.66 0.572144
Target:  5'- aGGUCUACcGGAUGCgguuuccccGCUCGuuCACCa -3'
miRNA:   3'- gCCGGAUGuCCUGCG---------CGAGUu-GUGGc -5'
1485 5' -57.2 NC_001335.1 + 20743 0.67 0.518181
Target:  5'- uGGCCgACGGGGCgaugaagGCGUUC-ACGCUGu -3'
miRNA:   3'- gCCGGaUGUCCUG-------CGCGAGuUGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 22212 0.67 0.516103
Target:  5'- gGGCCgucuuGGAgCGCGUUCAugaucgccugcacaGCGCCGg -3'
miRNA:   3'- gCCGGaugu-CCU-GCGCGAGU--------------UGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 50848 0.68 0.508857
Target:  5'- aGGCCgACAGGcCGgGCgu--CACCGg -3'
miRNA:   3'- gCCGGaUGUCCuGCgCGaguuGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 6302 0.68 0.508857
Target:  5'- aCGGCUUugAGGuccgcgacuACGCGCaCGACGgCGa -3'
miRNA:   3'- -GCCGGAugUCC---------UGCGCGaGUUGUgGC- -5'
1485 5' -57.2 NC_001335.1 + 29240 0.68 0.498582
Target:  5'- aGcGCCgcCAGGACGCgaaGCUCcuGCGCCu -3'
miRNA:   3'- gC-CGGauGUCCUGCG---CGAGu-UGUGGc -5'
1485 5' -57.2 NC_001335.1 + 37681 0.68 0.4884
Target:  5'- uGGCUUGCagccGGGACGgGUgu-ACACCGu -3'
miRNA:   3'- gCCGGAUG----UCCUGCgCGaguUGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 49637 0.68 0.478317
Target:  5'- uGGCCgcGCuGGACG-GCUaCAugACCGa -3'
miRNA:   3'- gCCGGa-UGuCCUGCgCGA-GUugUGGC- -5'
1485 5' -57.2 NC_001335.1 + 367 0.68 0.468337
Target:  5'- cCGGUCUuuagaugaGCGccuGGugGCGCUCuuaucGCGCCGc -3'
miRNA:   3'- -GCCGGA--------UGU---CCugCGCGAGu----UGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 14315 0.69 0.429538
Target:  5'- uCGGUgCUGCAGGcacCGCuGCUCcuACGCCGg -3'
miRNA:   3'- -GCCG-GAUGUCCu--GCG-CGAGu-UGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.