miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1485 5' -57.2 NC_001335.1 + 28581 0.69 0.429538
Target:  5'- -cGCCUGCgggaAGGugGCGCacUCGGCGCUc -3'
miRNA:   3'- gcCGGAUG----UCCugCGCG--AGUUGUGGc -5'
1485 5' -57.2 NC_001335.1 + 16492 0.69 0.429538
Target:  5'- aGGCCacguucUGCAGGuugggggugauCGCGgUCAGCAUCGg -3'
miRNA:   3'- gCCGG------AUGUCCu----------GCGCgAGUUGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 17117 0.69 0.429538
Target:  5'- aGaGCCUGCAGcGcCGUGUUCAGCgucguGCCGa -3'
miRNA:   3'- gC-CGGAUGUC-CuGCGCGAGUUG-----UGGC- -5'
1485 5' -57.2 NC_001335.1 + 16769 0.69 0.420137
Target:  5'- cCGGUCUGCAGG-CGaugggacaGCUCGGCGguCCGc -3'
miRNA:   3'- -GCCGGAUGUCCuGCg-------CGAGUUGU--GGC- -5'
1485 5' -57.2 NC_001335.1 + 17222 0.69 0.410861
Target:  5'- uGGCCga-GGGcCGuCGC-CAGCGCCGg -3'
miRNA:   3'- gCCGGaugUCCuGC-GCGaGUUGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 39760 0.69 0.410861
Target:  5'- gGGCCUgggggaugaaGCaggagggauGGGACGUGCUCcccgagcuGCACCGa -3'
miRNA:   3'- gCCGGA----------UG---------UCCUGCGCGAGu-------UGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 8904 0.69 0.409941
Target:  5'- uCGGCgUGCAuucggguGGGCG-GCUCGACGCgGa -3'
miRNA:   3'- -GCCGgAUGU-------CCUGCgCGAGUUGUGgC- -5'
1485 5' -57.2 NC_001335.1 + 45612 0.69 0.409941
Target:  5'- uGGUCgcugaccgucgagUACgAGGACGUGCUCGAgACCu -3'
miRNA:   3'- gCCGG-------------AUG-UCCUGCGCGAGUUgUGGc -5'
1485 5' -57.2 NC_001335.1 + 48325 0.69 0.401714
Target:  5'- gGGCCaGCAGGACGUGg-CcGCugCGg -3'
miRNA:   3'- gCCGGaUGUCCUGCGCgaGuUGugGC- -5'
1485 5' -57.2 NC_001335.1 + 9743 0.7 0.357971
Target:  5'- uCGGCCUGuuGGGCaCGauggUCGACGCCGa -3'
miRNA:   3'- -GCCGGAUguCCUGcGCg---AGUUGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 32584 0.7 0.357971
Target:  5'- -uGCCUGCGGGGCGCGa--GACugCu -3'
miRNA:   3'- gcCGGAUGUCCUGCGCgagUUGugGc -5'
1485 5' -57.2 NC_001335.1 + 5515 0.7 0.349632
Target:  5'- uCGuCCUGaucuGGGGCGgGCUCGACGCUGa -3'
miRNA:   3'- -GCcGGAUg---UCCUGCgCGAGUUGUGGC- -5'
1485 5' -57.2 NC_001335.1 + 22256 1.09 0.000665
Target:  5'- aCGGCCUACAGGACGCGCUCAACACCGu -3'
miRNA:   3'- -GCCGGAUGUCCUGCGCGAGUUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.