Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1485 | 5' | -57.2 | NC_001335.1 | + | 22256 | 1.09 | 0.000665 |
Target: 5'- aCGGCCUACAGGACGCGCUCAACACCGu -3' miRNA: 3'- -GCCGGAUGUCCUGCGCGAGUUGUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 48351 | 0.66 | 0.615381 |
Target: 5'- cCGGCCgcgACaAGGuACgGCGCg-AGCGCCGc -3' miRNA: 3'- -GCCGGa--UG-UCC-UG-CGCGagUUGUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 8588 | 0.66 | 0.593699 |
Target: 5'- uGGCCU-CuGGcCgGCGCUCAGCGUCGu -3' miRNA: 3'- gCCGGAuGuCCuG-CGCGAGUUGUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 22212 | 0.67 | 0.516103 |
Target: 5'- gGGCCgucuuGGAgCGCGUUCAugaucgccugcacaGCGCCGg -3' miRNA: 3'- gCCGGaugu-CCU-GCGCGAGU--------------UGUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 49637 | 0.68 | 0.478317 |
Target: 5'- uGGCCgcGCuGGACG-GCUaCAugACCGa -3' miRNA: 3'- gCCGGa-UGuCCUGCgCGA-GUugUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 367 | 0.68 | 0.468337 |
Target: 5'- cCGGUCUuuagaugaGCGccuGGugGCGCUCuuaucGCGCCGc -3' miRNA: 3'- -GCCGGA--------UGU---CCugCGCGAGu----UGUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 16492 | 0.69 | 0.429538 |
Target: 5'- aGGCCacguucUGCAGGuugggggugauCGCGgUCAGCAUCGg -3' miRNA: 3'- gCCGG------AUGUCCu----------GCGCgAGUUGUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 17117 | 0.69 | 0.429538 |
Target: 5'- aGaGCCUGCAGcGcCGUGUUCAGCgucguGCCGa -3' miRNA: 3'- gC-CGGAUGUC-CuGCGCGAGUUG-----UGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 17222 | 0.69 | 0.410861 |
Target: 5'- uGGCCga-GGGcCGuCGC-CAGCGCCGg -3' miRNA: 3'- gCCGGaugUCCuGC-GCGaGUUGUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 39760 | 0.69 | 0.410861 |
Target: 5'- gGGCCUgggggaugaaGCaggagggauGGGACGUGCUCcccgagcuGCACCGa -3' miRNA: 3'- gCCGGA----------UG---------UCCUGCGCGAGu-------UGUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 8904 | 0.69 | 0.409941 |
Target: 5'- uCGGCgUGCAuucggguGGGCG-GCUCGACGCgGa -3' miRNA: 3'- -GCCGgAUGU-------CCUGCgCGAGUUGUGgC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 45612 | 0.69 | 0.409941 |
Target: 5'- uGGUCgcugaccgucgagUACgAGGACGUGCUCGAgACCu -3' miRNA: 3'- gCCGG-------------AUG-UCCUGCGCGAGUUgUGGc -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 43736 | 0.66 | 0.62516 |
Target: 5'- gCGGCgUgguugccGCAGGGCaccGCGUUUcACACCGu -3' miRNA: 3'- -GCCGgA-------UGUCCUG---CGCGAGuUGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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