Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1485 | 5' | -57.2 | NC_001335.1 | + | 29240 | 0.68 | 0.498582 |
Target: 5'- aGcGCCgcCAGGACGCgaaGCUCcuGCGCCu -3' miRNA: 3'- gC-CGGauGUCCUGCG---CGAGu-UGUGGc -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 30145 | 0.66 | 0.582902 |
Target: 5'- aGGUCga-AGGAgGCGUUCuggAGCACCa -3' miRNA: 3'- gCCGGaugUCCUgCGCGAG---UUGUGGc -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 32584 | 0.7 | 0.357971 |
Target: 5'- -uGCCUGCGGGGCGCGa--GACugCu -3' miRNA: 3'- gcCGGAUGUCCUGCGCgagUUGugGc -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 33063 | 0.66 | 0.615381 |
Target: 5'- gGaGCCUGCGGGAa--GCUgGACuCCGg -3' miRNA: 3'- gC-CGGAUGUCCUgcgCGAgUUGuGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 37681 | 0.68 | 0.4884 |
Target: 5'- uGGCUUGCagccGGGACGgGUgu-ACACCGu -3' miRNA: 3'- gCCGGAUG----UCCUGCgCGaguUGUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 39760 | 0.69 | 0.410861 |
Target: 5'- gGGCCUgggggaugaaGCaggagggauGGGACGUGCUCcccgagcuGCACCGa -3' miRNA: 3'- gCCGGA----------UG---------UCCUGCGCGAGu-------UGUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 40110 | 0.66 | 0.604529 |
Target: 5'- aGGCUUGCGGGGaucCGgGCUCu---CCGg -3' miRNA: 3'- gCCGGAUGUCCU---GCgCGAGuuguGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 43736 | 0.66 | 0.62516 |
Target: 5'- gCGGCgUgguugccGCAGGGCaccGCGUUUcACACCGu -3' miRNA: 3'- -GCCGgA-------UGUCCUG---CGCGAGuUGUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 45612 | 0.69 | 0.409941 |
Target: 5'- uGGUCgcugaccgucgagUACgAGGACGUGCUCGAgACCu -3' miRNA: 3'- gCCGG-------------AUG-UCCUGCGCGAGUUgUGGc -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 48325 | 0.69 | 0.401714 |
Target: 5'- gGGCCaGCAGGACGUGg-CcGCugCGg -3' miRNA: 3'- gCCGGaUGUCCUGCGCgaGuUGugGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 48351 | 0.66 | 0.615381 |
Target: 5'- cCGGCCgcgACaAGGuACgGCGCg-AGCGCCGc -3' miRNA: 3'- -GCCGGa--UG-UCC-UG-CGCGagUUGUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 49637 | 0.68 | 0.478317 |
Target: 5'- uGGCCgcGCuGGACG-GCUaCAugACCGa -3' miRNA: 3'- gCCGGa-UGuCCUGCgCGA-GUugUGGC- -5' |
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1485 | 5' | -57.2 | NC_001335.1 | + | 50848 | 0.68 | 0.508857 |
Target: 5'- aGGCCgACAGGcCGgGCgu--CACCGg -3' miRNA: 3'- gCCGGaUGUCCuGCgCGaguuGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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