miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1487 3' -56.2 NC_001335.1 + 21968 0.66 0.664782
Target:  5'- aUGC-GCCGUcagcGCCGAUGGCCuCUAGu -3'
miRNA:   3'- cAUGaUGGCA----CGGCUGCCGGuGGUUg -5'
1487 3' -56.2 NC_001335.1 + 5601 0.66 0.658188
Target:  5'- gGUGC-GCCG-GCCGuaGCGGCaggcaccguacgcaGCCAGCg -3'
miRNA:   3'- -CAUGaUGGCaCGGC--UGCCGg-------------UGGUUG- -5'
1487 3' -56.2 NC_001335.1 + 39951 0.66 0.653786
Target:  5'- -aGCUGgucaCGUcGCaCGACGGCCugCAGu -3'
miRNA:   3'- caUGAUg---GCA-CG-GCUGCCGGugGUUg -5'
1487 3' -56.2 NC_001335.1 + 7955 0.66 0.642771
Target:  5'- -aGCagGCCGUcGCUGAcaCGGCaGCCGACg -3'
miRNA:   3'- caUGa-UGGCA-CGGCU--GCCGgUGGUUG- -5'
1487 3' -56.2 NC_001335.1 + 36244 0.66 0.642771
Target:  5'- -gACUcgGCCGUcGaCCGAgaacCGGCCuCCGACa -3'
miRNA:   3'- caUGA--UGGCA-C-GGCU----GCCGGuGGUUG- -5'
1487 3' -56.2 NC_001335.1 + 8620 0.66 0.619619
Target:  5'- uUGCUGCaucucucucgggaCGgugacGCCGAUGGCCucugGCCGGCg -3'
miRNA:   3'- cAUGAUG-------------GCa----CGGCUGCCGG----UGGUUG- -5'
1487 3' -56.2 NC_001335.1 + 26593 0.67 0.576816
Target:  5'- ----gACCGaGCCGaACGGCCuugaGCCGGCc -3'
miRNA:   3'- caugaUGGCaCGGC-UGCCGG----UGGUUG- -5'
1487 3' -56.2 NC_001335.1 + 30035 0.67 0.576816
Target:  5'- ----cGCCGgccucgaaggGCCGGgGGuCCACCAGCu -3'
miRNA:   3'- caugaUGGCa---------CGGCUgCC-GGUGGUUG- -5'
1487 3' -56.2 NC_001335.1 + 36376 0.67 0.576815
Target:  5'- --uCUGCUGacgGUCGACGGCCAgCAc- -3'
miRNA:   3'- cauGAUGGCa--CGGCUGCCGGUgGUug -5'
1487 3' -56.2 NC_001335.1 + 38076 0.67 0.565932
Target:  5'- -cACcGCCGaGCUguGugGGCUGCCGACg -3'
miRNA:   3'- caUGaUGGCaCGG--CugCCGGUGGUUG- -5'
1487 3' -56.2 NC_001335.1 + 26686 0.67 0.555102
Target:  5'- -aACUACaucGCCGACGGCCGgcUCAAg -3'
miRNA:   3'- caUGAUGgcaCGGCUGCCGGU--GGUUg -5'
1487 3' -56.2 NC_001335.1 + 3639 0.67 0.544334
Target:  5'- -aACUACuuggggucgaCGUGgagaUGACGGUCACCGACa -3'
miRNA:   3'- caUGAUG----------GCACg---GCUGCCGGUGGUUG- -5'
1487 3' -56.2 NC_001335.1 + 2168 0.68 0.533635
Target:  5'- cGUACUGacCCG-GCUGuCGGCCACgAAg -3'
miRNA:   3'- -CAUGAU--GGCaCGGCuGCCGGUGgUUg -5'
1487 3' -56.2 NC_001335.1 + 50128 0.68 0.533634
Target:  5'- -cGCUGCUGU-CCGAgaUGGUCGCCGAg -3'
miRNA:   3'- caUGAUGGCAcGGCU--GCCGGUGGUUg -5'
1487 3' -56.2 NC_001335.1 + 34394 0.68 0.523011
Target:  5'- -cGCUGCCGUucgcugugauGCUGcagaaGGUCGCCAACa -3'
miRNA:   3'- caUGAUGGCA----------CGGCug---CCGGUGGUUG- -5'
1487 3' -56.2 NC_001335.1 + 33818 0.68 0.523011
Target:  5'- --cUUGCCG-GCCGGCGucacgaacGCCGCCAGg -3'
miRNA:   3'- cauGAUGGCaCGGCUGC--------CGGUGGUUg -5'
1487 3' -56.2 NC_001335.1 + 29032 0.68 0.512469
Target:  5'- -gGCUACauCGUcaacgcgauggGCCGGCGGCUGCCggUg -3'
miRNA:   3'- caUGAUG--GCA-----------CGGCUGCCGGUGGuuG- -5'
1487 3' -56.2 NC_001335.1 + 17230 0.68 0.502017
Target:  5'- cUGCgACCuG-GCCGAgGGCCgucGCCAGCg -3'
miRNA:   3'- cAUGaUGG-CaCGGCUgCCGG---UGGUUG- -5'
1487 3' -56.2 NC_001335.1 + 4150 0.68 0.502017
Target:  5'- -gGCUGCCucGCCGGuCGGCaugugaACCAACu -3'
miRNA:   3'- caUGAUGGcaCGGCU-GCCGg-----UGGUUG- -5'
1487 3' -56.2 NC_001335.1 + 11893 0.68 0.491658
Target:  5'- uUGgaGCCgGUGCCGucCGGguCCACCAGCg -3'
miRNA:   3'- cAUgaUGG-CACGGCu-GCC--GGUGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.