miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1495 3' -58.1 NC_001335.1 + 26656 0.66 0.567176
Target:  5'- gUUCGGCUCGGUCcccgGCUGAUCcGCg -3'
miRNA:   3'- gAGGUCGAGCCAGucg-UGGCUGGaCG- -5'
1495 3' -58.1 NC_001335.1 + 9366 0.66 0.556513
Target:  5'- -gCCAGCUCGG-CuGCAgaGAaCUGCu -3'
miRNA:   3'- gaGGUCGAGCCaGuCGUggCUgGACG- -5'
1495 3' -58.1 NC_001335.1 + 32702 0.66 0.545909
Target:  5'- gCUCCGGU--GGaUCcGCGCCGGCCaacgGCg -3'
miRNA:   3'- -GAGGUCGagCC-AGuCGUGGCUGGa---CG- -5'
1495 3' -58.1 NC_001335.1 + 32173 0.66 0.535371
Target:  5'- -gCCAGCUC-GUCGGCAUCGAagucGCc -3'
miRNA:   3'- gaGGUCGAGcCAGUCGUGGCUgga-CG- -5'
1495 3' -58.1 NC_001335.1 + 28705 0.66 0.524904
Target:  5'- cCUCgGGgUCGGUgccaacCAGCACCgGACCcaucuguucuUGCa -3'
miRNA:   3'- -GAGgUCgAGCCA------GUCGUGG-CUGG----------ACG- -5'
1495 3' -58.1 NC_001335.1 + 46364 0.66 0.523862
Target:  5'- cCUCagCGGCUaugcccaCGGUCAGCGCgaCGGCC-GCa -3'
miRNA:   3'- -GAG--GUCGA-------GCCAGUCGUG--GCUGGaCG- -5'
1495 3' -58.1 NC_001335.1 + 17517 0.66 0.523862
Target:  5'- aUCCAG-UCGGcUCucgccaaccugauGGcCAUCGGCCUGCa -3'
miRNA:   3'- gAGGUCgAGCC-AG-------------UC-GUGGCUGGACG- -5'
1495 3' -58.1 NC_001335.1 + 18029 0.67 0.494001
Target:  5'- gUCgAGCU-GGUucugCAGCGCCucucGGCCUGCc -3'
miRNA:   3'- gAGgUCGAgCCA----GUCGUGG----CUGGACG- -5'
1495 3' -58.1 NC_001335.1 + 9102 0.67 0.48792
Target:  5'- gUCCGGUUCGGaagCGGCAcaacgggaacgacgcCCaGACCgUGCg -3'
miRNA:   3'- gAGGUCGAGCCa--GUCGU---------------GG-CUGG-ACG- -5'
1495 3' -58.1 NC_001335.1 + 35623 0.67 0.483885
Target:  5'- -aCguGCUCGGUCAGC---GACUUGUg -3'
miRNA:   3'- gaGguCGAGCCAGUCGuggCUGGACG- -5'
1495 3' -58.1 NC_001335.1 + 24342 0.67 0.483885
Target:  5'- -aUCAGCUCcuuGGUCGucGCACCuGCCUGa -3'
miRNA:   3'- gaGGUCGAG---CCAGU--CGUGGcUGGACg -5'
1495 3' -58.1 NC_001335.1 + 26734 0.67 0.477862
Target:  5'- aUCCAGgagaccgcugacuacCUCGGugUCAGCACCaaGACCguccGCa -3'
miRNA:   3'- gAGGUC---------------GAGCC--AGUCGUGG--CUGGa---CG- -5'
1495 3' -58.1 NC_001335.1 + 9940 0.67 0.473868
Target:  5'- gUCCAGCUCucgcuguaGGUgagUGGCugCGACUgcUGCa -3'
miRNA:   3'- gAGGUCGAG--------CCA---GUCGugGCUGG--ACG- -5'
1495 3' -58.1 NC_001335.1 + 39617 0.67 0.463957
Target:  5'- -cUCGGCaacUCaGUCGGCACCcGGCaCUGCa -3'
miRNA:   3'- gaGGUCG---AGcCAGUCGUGG-CUG-GACG- -5'
1495 3' -58.1 NC_001335.1 + 16192 0.67 0.454155
Target:  5'- gCUCC-GCU-GGUCGGCaucgugGCCGGUCUGCu -3'
miRNA:   3'- -GAGGuCGAgCCAGUCG------UGGCUGGACG- -5'
1495 3' -58.1 NC_001335.1 + 33496 0.68 0.425443
Target:  5'- aUCCGGCgugugCGGUucaaccucaaCAGCgacaugGCCGAgCUGCg -3'
miRNA:   3'- gAGGUCGa----GCCA----------GUCG------UGGCUgGACG- -5'
1495 3' -58.1 NC_001335.1 + 48563 0.68 0.416115
Target:  5'- --aCGGCUUGGUCG--ACCGGCUUGUa -3'
miRNA:   3'- gagGUCGAGCCAGUcgUGGCUGGACG- -5'
1495 3' -58.1 NC_001335.1 + 16384 0.68 0.406914
Target:  5'- uCUCCAGCgUCGGggCAGCGUCGAggcggCUGCc -3'
miRNA:   3'- -GAGGUCG-AGCCa-GUCGUGGCUg----GACG- -5'
1495 3' -58.1 NC_001335.1 + 6100 0.68 0.406914
Target:  5'- gUCCAGCU---UCAGC-UCGAUCUGCa -3'
miRNA:   3'- gAGGUCGAgccAGUCGuGGCUGGACG- -5'
1495 3' -58.1 NC_001335.1 + 12729 0.7 0.34132
Target:  5'- gUCCAGgUCGGggauccggcgcuugaUCAuGCGCuCGAUCUGCu -3'
miRNA:   3'- gAGGUCgAGCC---------------AGU-CGUG-GCUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.