Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1496 | 3' | -58.2 | NC_001335.1 | + | 18807 | 0.66 | 0.613261 |
Target: 5'- aCGGGU-CGUACgCgaugCACGACauCACCg -3' miRNA: 3'- gGCCCAgGCGUGgGaa--GUGCUG--GUGG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 51783 | 0.66 | 0.613261 |
Target: 5'- gCGGca-CGUaguGCCCUUUACaGCCACCg -3' miRNA: 3'- gGCCcagGCG---UGGGAAGUGcUGGUGG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 49834 | 0.66 | 0.613261 |
Target: 5'- uCCGGGUCUGCGCUgaagUAC-AgCGCCa -3' miRNA: 3'- -GGCCCAGGCGUGGgaa-GUGcUgGUGG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 22680 | 0.66 | 0.602657 |
Target: 5'- -aGGGUacuaCCGUGCCg---ACGGCCACCa -3' miRNA: 3'- ggCCCA----GGCGUGGgaagUGCUGGUGG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 23197 | 0.66 | 0.602657 |
Target: 5'- gCCaGGGcacUCCGaacucgguCACCCgagUgACGAUCACCg -3' miRNA: 3'- -GG-CCC---AGGC--------GUGGGa--AgUGCUGGUGG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 442 | 0.66 | 0.602657 |
Target: 5'- -aGGG-CCGCGCaCUggCGCGGCCuugagauCCg -3' miRNA: 3'- ggCCCaGGCGUG-GGaaGUGCUGGu------GG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 30365 | 0.66 | 0.601598 |
Target: 5'- aCCGGGcuggacaUCUacaGCgACCCUUCGaguGCCGCCu -3' miRNA: 3'- -GGCCC-------AGG---CG-UGGGAAGUgc-UGGUGG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 5411 | 0.66 | 0.581528 |
Target: 5'- aCCucGUCgCGCuucacgccaaGCCCUUCGCGGCCAa- -3' miRNA: 3'- -GGccCAG-GCG----------UGGGAAGUGCUGGUgg -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 43239 | 0.66 | 0.581528 |
Target: 5'- cUCGGcGUguaCGCGCUCgcggUCGCGAUgACCu -3' miRNA: 3'- -GGCC-CAg--GCGUGGGa---AGUGCUGgUGG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 51351 | 0.66 | 0.581528 |
Target: 5'- gUCGGG-CUGCgGCCCUUCuCGGuCUugCg -3' miRNA: 3'- -GGCCCaGGCG-UGGGAAGuGCU-GGugG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 22214 | 0.66 | 0.581528 |
Target: 5'- gCGGG-CCGUcuuggaGCgCgUUCAUGAUCGCCu -3' miRNA: 3'- gGCCCaGGCG------UG-GgAAGUGCUGGUGG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 22088 | 0.66 | 0.571018 |
Target: 5'- aCUGGGUCgaaggaGCAUUCgaCACGGUCACCg -3' miRNA: 3'- -GGCCCAGg-----CGUGGGaaGUGCUGGUGG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 14571 | 0.67 | 0.560555 |
Target: 5'- gCUGGGUCUGUACU----ACGGCC-CCa -3' miRNA: 3'- -GGCCCAGGCGUGGgaagUGCUGGuGG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 45529 | 0.67 | 0.550146 |
Target: 5'- gUGGuUCCGCGCCgacCACGACCAgUg -3' miRNA: 3'- gGCCcAGGCGUGGgaaGUGCUGGUgG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 11737 | 0.67 | 0.550146 |
Target: 5'- gCCGGGUUCGCACggacgguuuCCgcCGaGGCCACg -3' miRNA: 3'- -GGCCCAGGCGUG---------GGaaGUgCUGGUGg -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 32790 | 0.67 | 0.543929 |
Target: 5'- aCGuGG-CCGaCACCCcaucgguggagugCugGACCGCCa -3' miRNA: 3'- gGC-CCaGGC-GUGGGaa-----------GugCUGGUGG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 49932 | 0.68 | 0.499126 |
Target: 5'- uCCGGGUugUCGCggaugacucgACCCcaaGCGGCCACa -3' miRNA: 3'- -GGCCCA--GGCG----------UGGGaagUGCUGGUGg -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 29190 | 0.68 | 0.499126 |
Target: 5'- -gGaGGUCCGCACCgUUCuCGAauGCCu -3' miRNA: 3'- ggC-CCAGGCGUGGgAAGuGCUggUGG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 48269 | 0.68 | 0.489168 |
Target: 5'- gCGGcGcucgcgCCGUACCUUgUCGCGGCCgGCCg -3' miRNA: 3'- gGCC-Ca-----GGCGUGGGA-AGUGCUGG-UGG- -5' |
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1496 | 3' | -58.2 | NC_001335.1 | + | 10584 | 0.68 | 0.477343 |
Target: 5'- aCCGGGaccaccagacagUCGCACCCU--GCGuGCCACUu -3' miRNA: 3'- -GGCCCa-----------GGCGUGGGAagUGC-UGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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