miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1499 5' -56.6 NC_001335.1 + 18863 0.69 0.429405
Target:  5'- gACGCUGCggaucaagguCGGCCGCgAGCAgGgUGGGCu -3'
miRNA:   3'- -UGUGGCG----------GCCGGUG-UUGUgUgACUCG- -5'
1499 5' -56.6 NC_001335.1 + 13803 0.66 0.595508
Target:  5'- gGCACCGUCucauaaggaGGUCACAugGCGCgaauGCc -3'
miRNA:   3'- -UGUGGCGG---------CCGGUGUugUGUGacu-CG- -5'
1499 5' -56.6 NC_001335.1 + 19443 0.68 0.509647
Target:  5'- cCGCCuGCgCGGCCugGucGCugGC-GAGCg -3'
miRNA:   3'- uGUGG-CG-GCCGGugU--UGugUGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 19067 0.7 0.401277
Target:  5'- cGCaACCGCCGGCU-CAAgACGCcgGGGUu -3'
miRNA:   3'- -UG-UGGCGGCCGGuGUUgUGUGa-CUCG- -5'
1499 5' -56.6 NC_001335.1 + 5990 0.67 0.545636
Target:  5'- -gGCCGUCGGUCGaaaaggguguCGCUGAGCu -3'
miRNA:   3'- ugUGGCGGCCGGUguugu-----GUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 2179 0.66 0.617443
Target:  5'- -gGCUGUCGGCCACGAagug--GGGCg -3'
miRNA:   3'- ugUGGCGGCCGGUGUUgugugaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 24641 0.67 0.562858
Target:  5'- cACGCgGgaaGcGCCACGGCGCACccgGAGCu -3'
miRNA:   3'- -UGUGgCgg-C-CGGUGUUGUGUGa--CUCG- -5'
1499 5' -56.6 NC_001335.1 + 6069 0.71 0.332266
Target:  5'- cGCGCUgGCCGGCUACu-CGCAggGAGCc -3'
miRNA:   3'- -UGUGG-CGGCCGGUGuuGUGUgaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 34344 0.72 0.301176
Target:  5'- -gGCCGCUGGCCACucCACcgaACgucuUGAGCu -3'
miRNA:   3'- ugUGGCGGCCGGUGuuGUG---UG----ACUCG- -5'
1499 5' -56.6 NC_001335.1 + 44423 0.69 0.429405
Target:  5'- cCGCCGCCGGCCAUAcCuuCGuaGGGCu -3'
miRNA:   3'- uGUGGCGGCCGGUGUuGu-GUgaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 36789 0.68 0.499249
Target:  5'- uGCACUGCUcggagucgGGCUugAuC-CGCUGAGCg -3'
miRNA:   3'- -UGUGGCGG--------CCGGugUuGuGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 9669 0.66 0.606465
Target:  5'- gGCugCGUCGGCCuuGGC-CGCguagguggGAGUg -3'
miRNA:   3'- -UGugGCGGCCGGugUUGuGUGa-------CUCG- -5'
1499 5' -56.6 NC_001335.1 + 46579 0.71 0.332266
Target:  5'- aGCACCGCUGGCCA--GCuCAa-GAGCu -3'
miRNA:   3'- -UGUGGCGGCCGGUguUGuGUgaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 34856 0.71 0.357091
Target:  5'- -uGCUGCCGGCagguCGGCAuCugUGGGCc -3'
miRNA:   3'- ugUGGCGGCCGgu--GUUGU-GugACUCG- -5'
1499 5' -56.6 NC_001335.1 + 52135 0.7 0.36565
Target:  5'- uGCGagaGCCGGCCuCGACACAC--AGCa -3'
miRNA:   3'- -UGUgg-CGGCCGGuGUUGUGUGacUCG- -5'
1499 5' -56.6 NC_001335.1 + 38878 0.7 0.392165
Target:  5'- aAC-CCGCCGGCCGucCAAguCAUcgggGAGCg -3'
miRNA:   3'- -UGuGGCGGCCGGU--GUUguGUGa---CUCG- -5'
1499 5' -56.6 NC_001335.1 + 3074 0.7 0.398529
Target:  5'- cGCGgCGUCGGUCaccuucggucagcaGCAGCGCGgaGAGCa -3'
miRNA:   3'- -UGUgGCGGCCGG--------------UGUUGUGUgaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 37307 0.67 0.573696
Target:  5'- gACAUCGCCGGUUAC-GCAgGCguucugGAGa -3'
miRNA:   3'- -UGUGGCGGCCGGUGuUGUgUGa-----CUCg -5'
1499 5' -56.6 NC_001335.1 + 22980 0.67 0.562858
Target:  5'- cACGCCGUCGGUgAUgccGACGguCgGAGCg -3'
miRNA:   3'- -UGUGGCGGCCGgUG---UUGUguGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 37755 0.67 0.562858
Target:  5'- uACACCcgucCCGGCUGCAAgcCAUGC-GAGCg -3'
miRNA:   3'- -UGUGGc---GGCCGGUGUU--GUGUGaCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.