miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1499 5' -56.6 NC_001335.1 + 34213 1.12 0.000417
Target:  5'- cACACCGCCGGCCACAACACACUGAGCg -3'
miRNA:   3'- -UGUGGCGGCCGGUGUUGUGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 32551 0.68 0.509647
Target:  5'- gUACCGCUucucGCCACcaGGCGCuucCUGAGCu -3'
miRNA:   3'- uGUGGCGGc---CGGUG--UUGUGu--GACUCG- -5'
1499 5' -56.6 NC_001335.1 + 19443 0.68 0.509647
Target:  5'- cCGCCuGCgCGGCCugGucGCugGC-GAGCg -3'
miRNA:   3'- uGUGG-CG-GCCGGugU--UGugUGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 24960 0.66 0.63943
Target:  5'- cCAUC-CCGGcCCACcACGCACgcaccaGAGCu -3'
miRNA:   3'- uGUGGcGGCC-GGUGuUGUGUGa-----CUCG- -5'
1499 5' -56.6 NC_001335.1 + 50747 0.72 0.293763
Target:  5'- gACGagUCGUCGGCCggggGCGGCGCACcuUGGGCg -3'
miRNA:   3'- -UGU--GGCGGCCGG----UGUUGUGUG--ACUCG- -5'
1499 5' -56.6 NC_001335.1 + 34344 0.72 0.301176
Target:  5'- -gGCCGCUGGCCACucCACcgaACgucuUGAGCu -3'
miRNA:   3'- ugUGGCGGCCGGUGuuGUG---UG----ACUCG- -5'
1499 5' -56.6 NC_001335.1 + 19067 0.7 0.401277
Target:  5'- cGCaACCGCCGGCU-CAAgACGCcgGGGUu -3'
miRNA:   3'- -UG-UGGCGGCCGGuGUUgUGUGa-CUCG- -5'
1499 5' -56.6 NC_001335.1 + 18863 0.69 0.429405
Target:  5'- gACGCUGCggaucaagguCGGCCGCgAGCAgGgUGGGCu -3'
miRNA:   3'- -UGUGGCG----------GCCGGUG-UUGUgUgACUCG- -5'
1499 5' -56.6 NC_001335.1 + 12622 0.68 0.478744
Target:  5'- -gAgCGCCGGCUcCAGCAgAUcGAGCg -3'
miRNA:   3'- ugUgGCGGCCGGuGUUGUgUGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 16929 0.68 0.499249
Target:  5'- gGCGCucaCGCCGGCCuucCAgacGCugGC-GAGCa -3'
miRNA:   3'- -UGUG---GCGGCCGGu--GU---UGugUGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 37703 0.68 0.488946
Target:  5'- uACACCGugaCCGGCgcgaACAGCGuucuCACgUGAGCa -3'
miRNA:   3'- -UGUGGC---GGCCGg---UGUUGU----GUG-ACUCG- -5'
1499 5' -56.6 NC_001335.1 + 14406 0.69 0.458661
Target:  5'- gACGagCGUCGGCCACAccagccgagGCACGCucccUGAGUu -3'
miRNA:   3'- -UGUg-GCGGCCGGUGU---------UGUGUG----ACUCG- -5'
1499 5' -56.6 NC_001335.1 + 5487 0.81 0.070874
Target:  5'- gGCACCGCC-GCCcCGGCACuGCUGGGCa -3'
miRNA:   3'- -UGUGGCGGcCGGuGUUGUG-UGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 13264 0.68 0.488946
Target:  5'- ---aCGUCGG-CACGACGUGCUGAGCa -3'
miRNA:   3'- ugugGCGGCCgGUGUUGUGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 9804 0.74 0.215713
Target:  5'- gGCACCGCCGaaGCCACAGCcggcCAUcGAGUc -3'
miRNA:   3'- -UGUGGCGGC--CGGUGUUGu---GUGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 44423 0.69 0.429405
Target:  5'- cCGCCGCCGGCCAUAcCuuCGuaGGGCu -3'
miRNA:   3'- uGUGGCGGCCGGUGUuGu-GUgaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 36789 0.68 0.499249
Target:  5'- uGCACUGCUcggagucgGGCUugAuC-CGCUGAGCg -3'
miRNA:   3'- -UGUGGCGG--------CCGGugUuGuGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 32999 0.68 0.509647
Target:  5'- gACACCGUCuucgacggcuuuGGCCGCAGCAgauucgUACUGcuGCu -3'
miRNA:   3'- -UGUGGCGG------------CCGGUGUUGU------GUGACu-CG- -5'
1499 5' -56.6 NC_001335.1 + 43836 0.73 0.245835
Target:  5'- aGCGCC-CCGuCgACAGCgACACUGAGCa -3'
miRNA:   3'- -UGUGGcGGCcGgUGUUG-UGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 6069 0.71 0.332266
Target:  5'- cGCGCUgGCCGGCUACu-CGCAggGAGCc -3'
miRNA:   3'- -UGUGG-CGGCCGGUGuuGUGUgaCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.