miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1499 5' -56.6 NC_001335.1 + 656 0.66 0.584583
Target:  5'- cGCGCCGCCguucuuGGCgGCGuaauCGCGgUGAcGCg -3'
miRNA:   3'- -UGUGGCGG------CCGgUGUu---GUGUgACU-CG- -5'
1499 5' -56.6 NC_001335.1 + 2179 0.66 0.617443
Target:  5'- -gGCUGUCGGCCACGAagug--GGGCg -3'
miRNA:   3'- ugUGGCGGCCGGUGUUgugugaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 3074 0.7 0.398529
Target:  5'- cGCGgCGUCGGUCaccuucggucagcaGCAGCGCGgaGAGCa -3'
miRNA:   3'- -UGUgGCGGCCGG--------------UGUUGUGUgaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 3174 0.68 0.520136
Target:  5'- cCGCCGCUcGCCuugGCGAgGCGCugcuUGAGCa -3'
miRNA:   3'- uGUGGCGGcCGG---UGUUgUGUG----ACUCG- -5'
1499 5' -56.6 NC_001335.1 + 3322 0.68 0.488946
Target:  5'- -gACCGgCGGCgaaCACAACGCGCUGcaucaGGUc -3'
miRNA:   3'- ugUGGCgGCCG---GUGUUGUGUGAC-----UCG- -5'
1499 5' -56.6 NC_001335.1 + 4158 0.67 0.541356
Target:  5'- uCGCCGCCGGCUGCcuCGC-CggucGGCa -3'
miRNA:   3'- uGUGGCGGCCGGUGuuGUGuGac--UCG- -5'
1499 5' -56.6 NC_001335.1 + 5487 0.81 0.070874
Target:  5'- gGCACCGCC-GCCcCGGCACuGCUGGGCa -3'
miRNA:   3'- -UGUGGCGGcCGGuGUUGUG-UGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 5990 0.67 0.545636
Target:  5'- -gGCCGUCGGUCGaaaaggguguCGCUGAGCu -3'
miRNA:   3'- ugUGGCGGCCGGUguugu-----GUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 6069 0.71 0.332266
Target:  5'- cGCGCUgGCCGGCUACu-CGCAggGAGCc -3'
miRNA:   3'- -UGUGG-CGGCCGGUGuuGUGUgaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 9669 0.66 0.606465
Target:  5'- gGCugCGUCGGCCuuGGC-CGCguagguggGAGUg -3'
miRNA:   3'- -UGugGCGGCCGGugUUGuGUGa-------CUCG- -5'
1499 5' -56.6 NC_001335.1 + 9804 0.74 0.215713
Target:  5'- gGCACCGCCGaaGCCACAGCcggcCAUcGAGUc -3'
miRNA:   3'- -UGUGGCGGC--CGGUGUUGu---GUGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 10752 0.66 0.628435
Target:  5'- uCGCCGCgugcuaGGCgGCGucggaGCGCGUUGAGCg -3'
miRNA:   3'- uGUGGCGg-----CCGgUGU-----UGUGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 12622 0.68 0.478744
Target:  5'- -gAgCGCCGGCUcCAGCAgAUcGAGCg -3'
miRNA:   3'- ugUgGCGGCCGGuGUUGUgUGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 13264 0.68 0.488946
Target:  5'- ---aCGUCGG-CACGACGUGCUGAGCa -3'
miRNA:   3'- ugugGCGGCCgGUGUUGUGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 13455 0.68 0.509647
Target:  5'- cCACCGCUGGUCuCGcCACucgaucugggACUGGGCc -3'
miRNA:   3'- uGUGGCGGCCGGuGUuGUG----------UGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 13783 0.66 0.628435
Target:  5'- gACGgCGCgUGGCCGaacucaagcgcCAACGCGUUGGGCg -3'
miRNA:   3'- -UGUgGCG-GCCGGU-----------GUUGUGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 13803 0.66 0.595508
Target:  5'- gGCACCGUCucauaaggaGGUCACAugGCGCgaauGCc -3'
miRNA:   3'- -UGUGGCGG---------CCGGUGUugUGUGacu-CG- -5'
1499 5' -56.6 NC_001335.1 + 14406 0.69 0.458661
Target:  5'- gACGagCGUCGGCCACAccagccgagGCACGCucccUGAGUu -3'
miRNA:   3'- -UGUg-GCGGCCGGUGU---------UGUGUG----ACUCG- -5'
1499 5' -56.6 NC_001335.1 + 16283 0.66 0.595508
Target:  5'- -gACCGgccagcagaCCGGCCACGAUGCcgaccaGCgGAGCu -3'
miRNA:   3'- ugUGGC---------GGCCGGUGUUGUG------UGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 16929 0.68 0.499249
Target:  5'- gGCGCucaCGCCGGCCuucCAgacGCugGC-GAGCa -3'
miRNA:   3'- -UGUG---GCGGCCGGu--GU---UGugUGaCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.