miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1499 5' -56.6 NC_001335.1 + 34213 1.12 0.000417
Target:  5'- cACACCGCCGGCCACAACACACUGAGCg -3'
miRNA:   3'- -UGUGGCGGCCGGUGUUGUGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 5487 0.81 0.070874
Target:  5'- gGCACCGCC-GCCcCGGCACuGCUGGGCa -3'
miRNA:   3'- -UGUGGCGGcCGGuGUUGUG-UGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 50824 0.8 0.079508
Target:  5'- uGCGCCGCCcccGGCCgACGACucguCGCUGGGCc -3'
miRNA:   3'- -UGUGGCGG---CCGG-UGUUGu---GUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 36520 0.78 0.118291
Target:  5'- cCACCGCCagggcaucaaGCCAC-ACACGCUGGGCu -3'
miRNA:   3'- uGUGGCGGc---------CGGUGuUGUGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 48357 0.76 0.160458
Target:  5'- -gGCCgGCCGGCCGCGACaagguacgGCGC-GAGCg -3'
miRNA:   3'- ugUGG-CGGCCGGUGUUG--------UGUGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 22667 0.76 0.167619
Target:  5'- uCACCGCCGGCCACGccgccagcguucuGCugguuguccagucgACGCUGcAGCu -3'
miRNA:   3'- uGUGGCGGCCGGUGU-------------UG--------------UGUGAC-UCG- -5'
1499 5' -56.6 NC_001335.1 + 25928 0.75 0.183795
Target:  5'- cACcCCGuuGGCCGCAGCcagcuCGCUGAGa -3'
miRNA:   3'- -UGuGGCggCCGGUGUUGu----GUGACUCg -5'
1499 5' -56.6 NC_001335.1 + 9804 0.74 0.215713
Target:  5'- gGCACCGCCGaaGCCACAGCcggcCAUcGAGUc -3'
miRNA:   3'- -UGUGGCGGC--CGGUGUUGu---GUGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 43836 0.73 0.245835
Target:  5'- aGCGCC-CCGuCgACAGCgACACUGAGCa -3'
miRNA:   3'- -UGUGGcGGCcGgUGUUG-UGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 23121 0.72 0.286493
Target:  5'- aGCACCGuuGGCCGugcCGGCGguCaGAGCg -3'
miRNA:   3'- -UGUGGCggCCGGU---GUUGUguGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 50747 0.72 0.293763
Target:  5'- gACGagUCGUCGGCCggggGCGGCGCACcuUGGGCg -3'
miRNA:   3'- -UGU--GGCGGCCGG----UGUUGUGUG--ACUCG- -5'
1499 5' -56.6 NC_001335.1 + 34344 0.72 0.301176
Target:  5'- -gGCCGCUGGCCACucCACcgaACgucuUGAGCu -3'
miRNA:   3'- ugUGGCGGCCGGUGuuGUG---UG----ACUCG- -5'
1499 5' -56.6 NC_001335.1 + 6069 0.71 0.332266
Target:  5'- cGCGCUgGCCGGCUACu-CGCAggGAGCc -3'
miRNA:   3'- -UGUGG-CGGCCGGUGuuGUGUgaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 46579 0.71 0.332266
Target:  5'- aGCACCGCUGGCCA--GCuCAa-GAGCu -3'
miRNA:   3'- -UGUGGCGGCCGGUguUGuGUgaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 34856 0.71 0.357091
Target:  5'- -uGCUGCCGGCagguCGGCAuCugUGGGCc -3'
miRNA:   3'- ugUGGCGGCCGgu--GUUGU-GugACUCG- -5'
1499 5' -56.6 NC_001335.1 + 52135 0.7 0.36565
Target:  5'- uGCGagaGCCGGCCuCGACACAC--AGCa -3'
miRNA:   3'- -UGUgg-CGGCCGGuGUUGUGUGacUCG- -5'
1499 5' -56.6 NC_001335.1 + 38878 0.7 0.392165
Target:  5'- aAC-CCGCCGGCCGucCAAguCAUcgggGAGCg -3'
miRNA:   3'- -UGuGGCGGCCGGU--GUUguGUGa---CUCG- -5'
1499 5' -56.6 NC_001335.1 + 3074 0.7 0.398529
Target:  5'- cGCGgCGUCGGUCaccuucggucagcaGCAGCGCGgaGAGCa -3'
miRNA:   3'- -UGUgGCGGCCGG--------------UGUUGUGUgaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 19067 0.7 0.401277
Target:  5'- cGCaACCGCCGGCU-CAAgACGCcgGGGUu -3'
miRNA:   3'- -UG-UGGCGGCCGGuGUUgUGUGa-CUCG- -5'
1499 5' -56.6 NC_001335.1 + 18863 0.69 0.429405
Target:  5'- gACGCUGCggaucaagguCGGCCGCgAGCAgGgUGGGCu -3'
miRNA:   3'- -UGUGGCG----------GCCGGUG-UUGUgUgACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.