miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1506 3' -55.2 NC_001335.1 + 12692 0.66 0.701456
Target:  5'- cGUCgGCGAcGUUCCGGGCCGAuCUGa- -3'
miRNA:   3'- -CAGgUGCU-UAGGGUCUGGCUuGGCcg -5'
1506 3' -55.2 NC_001335.1 + 22462 0.67 0.658013
Target:  5'- -aCCggGCGcGUCCCAGACCaGGACCa-- -3'
miRNA:   3'- caGG--UGCuUAGGGUCUGG-CUUGGccg -5'
1506 3' -55.2 NC_001335.1 + 14376 0.68 0.625142
Target:  5'- -gCC-CGAGaCCUGGACCGGugcuACCGGUu -3'
miRNA:   3'- caGGuGCUUaGGGUCUGGCU----UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 36230 0.66 0.7407
Target:  5'- uUCUA-GAccUCCCAGACUcggccgucgaccgaGAACCGGCc -3'
miRNA:   3'- cAGGUgCUu-AGGGUCUGG--------------CUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 35318 0.67 0.690668
Target:  5'- cUCCGgGAAcaccucggCCCGGuacagcuCCGAACCGGg -3'
miRNA:   3'- cAGGUgCUUa-------GGGUCu------GGCUUGGCCg -5'
1506 3' -55.2 NC_001335.1 + 26573 0.68 0.596689
Target:  5'- cUCCACGcgGAUCagCCggGGACCGAgccgaacggccuugaGCCGGCc -3'
miRNA:   3'- cAGGUGC--UUAG--GG--UCUGGCU---------------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 47873 0.66 0.7407
Target:  5'- uGUCCACGAcuucguggaccuuggCCCAGAacu-GCCGGUc -3'
miRNA:   3'- -CAGGUGCUua-------------GGGUCUggcuUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 3858 0.69 0.570598
Target:  5'- aGUUCAcCGGAUCCCuugggcugcaGCCGAuuCCGGCu -3'
miRNA:   3'- -CAGGU-GCUUAGGGuc--------UGGCUu-GGCCG- -5'
1506 3' -55.2 NC_001335.1 + 24688 0.69 0.564116
Target:  5'- cGUCCACGAuGUCCUugcggcGAagcucgaucagcucuCCGAACCGGa -3'
miRNA:   3'- -CAGGUGCU-UAGGGu-----CU---------------GGCUUGGCCg -5'
1506 3' -55.2 NC_001335.1 + 41397 0.67 0.636106
Target:  5'- ---gACGAAcgccgacuUCCCGGuGCCgGGGCCGGCg -3'
miRNA:   3'- caggUGCUU--------AGGGUC-UGG-CUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 32976 0.76 0.20917
Target:  5'- -aCCGCcccugCCCAGcCCGAGCCGGCc -3'
miRNA:   3'- caGGUGcuua-GGGUCuGGCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 29096 0.68 0.603243
Target:  5'- cUCUGCGAcauacCCCGGugUGGAgCGGCu -3'
miRNA:   3'- cAGGUGCUua---GGGUCugGCUUgGCCG- -5'
1506 3' -55.2 NC_001335.1 + 42341 0.68 0.603243
Target:  5'- cUCUACGA---CCAGAUCGucgcaaucucGACCGGCa -3'
miRNA:   3'- cAGGUGCUuagGGUCUGGC----------UUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 7232 0.68 0.603243
Target:  5'- gGUUCACG---UCCAGGCCGuACuCGGCc -3'
miRNA:   3'- -CAGGUGCuuaGGGUCUGGCuUG-GCCG- -5'
1506 3' -55.2 NC_001335.1 + 47259 0.72 0.399102
Target:  5'- cUCC-CGAGUUcgggCCAGACCGcgUCGGCu -3'
miRNA:   3'- cAGGuGCUUAG----GGUCUGGCuuGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 7985 0.67 0.690668
Target:  5'- uUCUGgGGAUCCCAGAUgucgaugaCGAACagcaGGCc -3'
miRNA:   3'- cAGGUgCUUAGGGUCUG--------GCUUGg---CCG- -5'
1506 3' -55.2 NC_001335.1 + 38366 0.72 0.390047
Target:  5'- uUUgGCGAGUCgCGGGCUG-GCCGGCc -3'
miRNA:   3'- cAGgUGCUUAGgGUCUGGCuUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 623 0.72 0.380244
Target:  5'- --aCGCGGcauAUUCCAGGCCGcgagauaGGCCGGCa -3'
miRNA:   3'- cagGUGCU---UAGGGUCUGGC-------UUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 27449 0.73 0.355199
Target:  5'- gGUCugCACGGugccAUCCCAGAuCUGAuccGCCGGCu -3'
miRNA:   3'- -CAG--GUGCU----UAGGGUCU-GGCU---UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 36790 0.73 0.338617
Target:  5'- uGUCCACGAGggcaaCCAcGACC--GCCGGCc -3'
miRNA:   3'- -CAGGUGCUUag---GGU-CUGGcuUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.