miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1506 3' -55.2 NC_001335.1 + 38251 1.12 0.000702
Target:  5'- cGUCCACGAAUCCCAGACCGAACCGGCu -3'
miRNA:   3'- -CAGGUGCUUAGGGUCUGGCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 33712 0.67 0.647067
Target:  5'- gGUCCA-GAAccUCCCGGcucuUCGggUCGGCc -3'
miRNA:   3'- -CAGGUgCUU--AGGGUCu---GGCuuGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 34770 0.67 0.658013
Target:  5'- -cCCcCGAggCCCAcagauGCCGAccuGCCGGCa -3'
miRNA:   3'- caGGuGCUuaGGGUc----UGGCU---UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 36230 0.66 0.7407
Target:  5'- uUCUA-GAccUCCCAGACUcggccgucgaccgaGAACCGGCc -3'
miRNA:   3'- cAGGUgCUu-AGGGUCUGG--------------CUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 28928 0.71 0.43663
Target:  5'- uGUCCGCGAgcuGUCaCCGGcaGCC--GCCGGCc -3'
miRNA:   3'- -CAGGUGCU---UAG-GGUC--UGGcuUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 23016 0.7 0.463078
Target:  5'- -aCCugGggUgCUGGAUCGAucuucgcucugaccGCCGGCa -3'
miRNA:   3'- caGGugCuuAgGGUCUGGCU--------------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 39790 0.69 0.527802
Target:  5'- -gCCaACGcuUCCCAGACCGugGugCGGUc -3'
miRNA:   3'- caGG-UGCuuAGGGUCUGGC--UugGCCG- -5'
1506 3' -55.2 NC_001335.1 + 25837 0.69 0.527802
Target:  5'- cGUUCACGGcUCUCAG--CGAGCUGGCu -3'
miRNA:   3'- -CAGGUGCUuAGGGUCugGCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 32757 0.69 0.559806
Target:  5'- -cCCACGggUCgCuGuACUGA-CCGGCg -3'
miRNA:   3'- caGGUGCuuAGgGuC-UGGCUuGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 41397 0.67 0.636106
Target:  5'- ---gACGAAcgccgacuUCCCGGuGCCgGGGCCGGCg -3'
miRNA:   3'- caggUGCUU--------AGGGUC-UGG-CUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 3858 0.69 0.570598
Target:  5'- aGUUCAcCGGAUCCCuugggcugcaGCCGAuuCCGGCu -3'
miRNA:   3'- -CAGGU-GCUUAGGGuc--------UGGCUu-GGCCG- -5'
1506 3' -55.2 NC_001335.1 + 497 0.69 0.559806
Target:  5'- aUCCGCGuacgaAAUCCCcgaucugcGGCCGAccgacuucguGCCGGCc -3'
miRNA:   3'- cAGGUGC-----UUAGGGu-------CUGGCU----------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 34887 0.75 0.238438
Target:  5'- cGUCCACGA--CCCucucGACCGuuuCCGGCc -3'
miRNA:   3'- -CAGGUGCUuaGGGu---CUGGCuu-GGCCG- -5'
1506 3' -55.2 NC_001335.1 + 26573 0.68 0.596689
Target:  5'- cUCCACGcgGAUCagCCggGGACCGAgccgaacggccuugaGCCGGCc -3'
miRNA:   3'- cAGGUGC--UUAG--GG--UCUGGCU---------------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 40655 0.73 0.338617
Target:  5'- --aCGCGGAgaggCCCAGgaucGCCGAuCCGGCg -3'
miRNA:   3'- cagGUGCUUa---GGGUC----UGGCUuGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 9773 0.69 0.559806
Target:  5'- -aCC-CGAcgGUCCCAGGcuccCCGAGCCccacGGCa -3'
miRNA:   3'- caGGuGCU--UAGGGUCU----GGCUUGG----CCG- -5'
1506 3' -55.2 NC_001335.1 + 14376 0.68 0.625142
Target:  5'- -gCC-CGAGaCCUGGACCGGugcuACCGGUu -3'
miRNA:   3'- caGGuGCUUaGGGUCUGGCU----UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 22462 0.67 0.658013
Target:  5'- -aCCggGCGcGUCCCAGACCaGGACCa-- -3'
miRNA:   3'- caGG--UGCuUAGGGUCUGG-CUUGGccg -5'
1506 3' -55.2 NC_001335.1 + 11515 0.72 0.363703
Target:  5'- --gCACGAccggccagaagAUCCCGcACUGGACCGGCg -3'
miRNA:   3'- cagGUGCU-----------UAGGGUcUGGCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 1027 0.7 0.506847
Target:  5'- gGUCCGCGAAUaCCC-GACCu-ACUGGg -3'
miRNA:   3'- -CAGGUGCUUA-GGGuCUGGcuUGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.