miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1506 3' -55.2 NC_001335.1 + 12184 0.69 0.5384
Target:  5'- -aCCugGc--CCCAGA-CGAGCUGGCg -3'
miRNA:   3'- caGGugCuuaGGGUCUgGCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 7232 0.68 0.603243
Target:  5'- gGUUCACG---UCCAGGCCGuACuCGGCc -3'
miRNA:   3'- -CAGGUGCuuaGGGUCUGGCuUG-GCCG- -5'
1506 3' -55.2 NC_001335.1 + 42341 0.68 0.603243
Target:  5'- cUCUACGA---CCAGAUCGucgcaaucucGACCGGCa -3'
miRNA:   3'- cAGGUGCUuagGGUCUGGC----------UUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 29096 0.68 0.603243
Target:  5'- cUCUGCGAcauacCCCGGugUGGAgCGGCu -3'
miRNA:   3'- cAGGUGCUua---GGGUCugGCUUgGCCG- -5'
1506 3' -55.2 NC_001335.1 + 7598 0.68 0.591235
Target:  5'- uUCUGCGGggggAUCUCggAGACCGGggugucgGCCGGCg -3'
miRNA:   3'- cAGGUGCU----UAGGG--UCUGGCU-------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 7140 0.69 0.570598
Target:  5'- -gCCGCGAcggugAUCCaCGcGGCUGAACgCGGCu -3'
miRNA:   3'- caGGUGCU-----UAGG-GU-CUGGCUUG-GCCG- -5'
1506 3' -55.2 NC_001335.1 + 43291 0.69 0.570598
Target:  5'- -gCUuCGAGUCCgGGACUacaaGACCGGCa -3'
miRNA:   3'- caGGuGCUUAGGgUCUGGc---UUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 20233 0.69 0.567355
Target:  5'- uGUCCuCGAuGUCCCAGACCacgcagccgucccgGAGCgGGa -3'
miRNA:   3'- -CAGGuGCU-UAGGGUCUGG--------------CUUGgCCg -5'
1506 3' -55.2 NC_001335.1 + 3329 0.69 0.5384
Target:  5'- gGUCCAgCGGaaGUCCCGGcCUGuGACCaGGCa -3'
miRNA:   3'- -CAGGU-GCU--UAGGGUCuGGC-UUGG-CCG- -5'
1506 3' -55.2 NC_001335.1 + 9076 0.68 0.614185
Target:  5'- ---aACGAcgCCCAGACCGuGCgGGa -3'
miRNA:   3'- caggUGCUuaGGGUCUGGCuUGgCCg -5'
1506 3' -55.2 NC_001335.1 + 47721 0.67 0.636106
Target:  5'- -cCCACuAcgCCgAGACCGAGgcUCGGCu -3'
miRNA:   3'- caGGUGcUuaGGgUCUGGCUU--GGCCG- -5'
1506 3' -55.2 NC_001335.1 + 20066 0.67 0.636106
Target:  5'- uUCUugGcgguGUCgUAGAacgucCCGAACCGGCu -3'
miRNA:   3'- cAGGugCu---UAGgGUCU-----GGCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 40031 0.66 0.743824
Target:  5'- cGUCCACGAauGUCCCu--UCGggUacaagcaGGCg -3'
miRNA:   3'- -CAGGUGCU--UAGGGucuGGCuuGg------CCG- -5'
1506 3' -55.2 NC_001335.1 + 32204 0.66 0.712177
Target:  5'- -gCUAcCGGucGUUCCAccGACCGAACCcGGCa -3'
miRNA:   3'- caGGU-GCU--UAGGGU--CUGGCUUGG-CCG- -5'
1506 3' -55.2 NC_001335.1 + 23135 0.66 0.701456
Target:  5'- -aCCuCGAAcuUCUCAGcACCGuuggccguGCCGGCg -3'
miRNA:   3'- caGGuGCUU--AGGGUC-UGGCu-------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 17801 0.67 0.690668
Target:  5'- cUCCAugccguugcCGAAUCCCucGGCggUGAACUGGCc -3'
miRNA:   3'- cAGGU---------GCUUAGGGu-CUG--GCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 49539 0.67 0.690668
Target:  5'- uUCCGCGAGgcugCCC--ACCGAGCCa-- -3'
miRNA:   3'- cAGGUGCUUa---GGGucUGGCUUGGccg -5'
1506 3' -55.2 NC_001335.1 + 7985 0.67 0.690668
Target:  5'- uUCUGgGGAUCCCAGAUgucgaugaCGAACagcaGGCc -3'
miRNA:   3'- cAGGUgCUUAGGGUCUG--------GCUUGg---CCG- -5'
1506 3' -55.2 NC_001335.1 + 5860 0.67 0.668936
Target:  5'- aUCUGCGuggCCagCGGGCCGAGCUGGg -3'
miRNA:   3'- cAGGUGCuuaGG--GUCUGGCUUGGCCg -5'
1506 3' -55.2 NC_001335.1 + 45992 0.67 0.667845
Target:  5'- cUCCAcCGAGUUCaAGGCCGAGacgcgaaagacguUCGGCa -3'
miRNA:   3'- cAGGU-GCUUAGGgUCUGGCUU-------------GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.