miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1506 3' -55.2 NC_001335.1 + 497 0.69 0.559806
Target:  5'- aUCCGCGuacgaAAUCCCcgaucugcGGCCGAccgacuucguGCCGGCc -3'
miRNA:   3'- cAGGUGC-----UUAGGGu-------CUGGCU----------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 623 0.72 0.380244
Target:  5'- --aCGCGGcauAUUCCAGGCCGcgagauaGGCCGGCa -3'
miRNA:   3'- cagGUGCU---UAGGGUCUGGC-------UUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 1027 0.7 0.506847
Target:  5'- gGUCCGCGAAUaCCC-GACCu-ACUGGg -3'
miRNA:   3'- -CAGGUGCUUA-GGGuCUGGcuUGGCCg -5'
1506 3' -55.2 NC_001335.1 + 3329 0.69 0.5384
Target:  5'- gGUCCAgCGGaaGUCCCGGcCUGuGACCaGGCa -3'
miRNA:   3'- -CAGGU-GCU--UAGGGUCuGGC-UUGG-CCG- -5'
1506 3' -55.2 NC_001335.1 + 3858 0.69 0.570598
Target:  5'- aGUUCAcCGGAUCCCuugggcugcaGCCGAuuCCGGCu -3'
miRNA:   3'- -CAGGU-GCUUAGGGuc--------UGGCUu-GGCCG- -5'
1506 3' -55.2 NC_001335.1 + 5860 0.67 0.668936
Target:  5'- aUCUGCGuggCCagCGGGCCGAGCUGGg -3'
miRNA:   3'- cAGGUGCuuaGG--GUCUGGCUUGGCCg -5'
1506 3' -55.2 NC_001335.1 + 7140 0.69 0.570598
Target:  5'- -gCCGCGAcggugAUCCaCGcGGCUGAACgCGGCu -3'
miRNA:   3'- caGGUGCU-----UAGG-GU-CUGGCUUG-GCCG- -5'
1506 3' -55.2 NC_001335.1 + 7232 0.68 0.603243
Target:  5'- gGUUCACG---UCCAGGCCGuACuCGGCc -3'
miRNA:   3'- -CAGGUGCuuaGGGUCUGGCuUG-GCCG- -5'
1506 3' -55.2 NC_001335.1 + 7598 0.68 0.591235
Target:  5'- uUCUGCGGggggAUCUCggAGACCGGggugucgGCCGGCg -3'
miRNA:   3'- cAGGUGCU----UAGGG--UCUGGCU-------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 7985 0.67 0.690668
Target:  5'- uUCUGgGGAUCCCAGAUgucgaugaCGAACagcaGGCc -3'
miRNA:   3'- cAGGUgCUUAGGGUCUG--------GCUUGg---CCG- -5'
1506 3' -55.2 NC_001335.1 + 9076 0.68 0.614185
Target:  5'- ---aACGAcgCCCAGACCGuGCgGGa -3'
miRNA:   3'- caggUGCUuaGGGUCUGGCuUGgCCg -5'
1506 3' -55.2 NC_001335.1 + 9773 0.69 0.559806
Target:  5'- -aCC-CGAcgGUCCCAGGcuccCCGAGCCccacGGCa -3'
miRNA:   3'- caGGuGCU--UAGGGUCU----GGCUUGG----CCG- -5'
1506 3' -55.2 NC_001335.1 + 11515 0.72 0.363703
Target:  5'- --gCACGAccggccagaagAUCCCGcACUGGACCGGCg -3'
miRNA:   3'- cagGUGCU-----------UAGGGUcUGGCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 11807 0.66 0.722819
Target:  5'- gGUCuCGCuGGUggaCCCGGACgGcACCGGCu -3'
miRNA:   3'- -CAG-GUGcUUA---GGGUCUGgCuUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 12184 0.69 0.5384
Target:  5'- -aCCugGc--CCCAGA-CGAGCUGGCg -3'
miRNA:   3'- caGGugCuuaGGGUCUgGCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 12692 0.66 0.701456
Target:  5'- cGUCgGCGAcGUUCCGGGCCGAuCUGa- -3'
miRNA:   3'- -CAGgUGCU-UAGGGUCUGGCUuGGCcg -5'
1506 3' -55.2 NC_001335.1 + 13182 0.66 0.722819
Target:  5'- cUCCgauggcaacaaGCGGA--CCAGGCCGucgaauACCGGCa -3'
miRNA:   3'- cAGG-----------UGCUUagGGUCUGGCu-----UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 13360 0.66 0.722819
Target:  5'- aUCCuCGGggcccaGUCCCAGAUCG-AgUGGCg -3'
miRNA:   3'- cAGGuGCU------UAGGGUCUGGCuUgGCCG- -5'
1506 3' -55.2 NC_001335.1 + 14376 0.68 0.625142
Target:  5'- -gCC-CGAGaCCUGGACCGGugcuACCGGUu -3'
miRNA:   3'- caGGuGCUUaGGGUCUGGCU----UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 17801 0.67 0.690668
Target:  5'- cUCCAugccguugcCGAAUCCCucGGCggUGAACUGGCc -3'
miRNA:   3'- cAGGU---------GCUUAGGGu-CUG--GCUUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.