miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1506 3' -55.2 NC_001335.1 + 17801 0.67 0.690668
Target:  5'- cUCCAugccguugcCGAAUCCCucGGCggUGAACUGGCc -3'
miRNA:   3'- cAGGU---------GCUUAGGGu-CUG--GCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 49539 0.67 0.690668
Target:  5'- uUCCGCGAGgcugCCC--ACCGAGCCa-- -3'
miRNA:   3'- cAGGUGCUUa---GGGucUGGCUUGGccg -5'
1506 3' -55.2 NC_001335.1 + 7985 0.67 0.690668
Target:  5'- uUCUGgGGAUCCCAGAUgucgaugaCGAACagcaGGCc -3'
miRNA:   3'- cAGGUgCUUAGGGUCUG--------GCUUGg---CCG- -5'
1506 3' -55.2 NC_001335.1 + 5860 0.67 0.668936
Target:  5'- aUCUGCGuggCCagCGGGCCGAGCUGGg -3'
miRNA:   3'- cAGGUGCuuaGG--GUCUGGCUUGGCCg -5'
1506 3' -55.2 NC_001335.1 + 7232 0.68 0.603243
Target:  5'- gGUUCACG---UCCAGGCCGuACuCGGCc -3'
miRNA:   3'- -CAGGUGCuuaGGGUCUGGCuUG-GCCG- -5'
1506 3' -55.2 NC_001335.1 + 9076 0.68 0.614185
Target:  5'- ---aACGAcgCCCAGACCGuGCgGGa -3'
miRNA:   3'- caggUGCUuaGGGUCUGGCuUGgCCg -5'
1506 3' -55.2 NC_001335.1 + 47721 0.67 0.636106
Target:  5'- -cCCACuAcgCCgAGACCGAGgcUCGGCu -3'
miRNA:   3'- caGGUGcUuaGGgUCUGGCUU--GGCCG- -5'
1506 3' -55.2 NC_001335.1 + 20066 0.67 0.636106
Target:  5'- uUCUugGcgguGUCgUAGAacgucCCGAACCGGCu -3'
miRNA:   3'- cAGGugCu---UAGgGUCU-----GGCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 45992 0.67 0.667845
Target:  5'- cUCCAcCGAGUUCaAGGCCGAGacgcgaaagacguUCGGCa -3'
miRNA:   3'- cAGGU-GCUUAGGgUCUGGCUU-------------GGCCG- -5'
1506 3' -55.2 NC_001335.1 + 497 0.69 0.559806
Target:  5'- aUCCGCGuacgaAAUCCCcgaucugcGGCCGAccgacuucguGCCGGCc -3'
miRNA:   3'- cAGGUGC-----UUAGGGu-------CUGGCU----------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 9773 0.69 0.559806
Target:  5'- -aCC-CGAcgGUCCCAGGcuccCCGAGCCccacGGCa -3'
miRNA:   3'- caGGuGCU--UAGGGUCU----GGCUUGG----CCG- -5'
1506 3' -55.2 NC_001335.1 + 25837 0.69 0.527802
Target:  5'- cGUUCACGGcUCUCAG--CGAGCUGGCu -3'
miRNA:   3'- -CAGGUGCUuAGGGUCugGCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 39790 0.69 0.527802
Target:  5'- -gCCaACGcuUCCCAGACCGugGugCGGUc -3'
miRNA:   3'- caGG-UGCuuAGGGUCUGGC--UugGCCG- -5'
1506 3' -55.2 NC_001335.1 + 1027 0.7 0.506847
Target:  5'- gGUCCGCGAAUaCCC-GACCu-ACUGGg -3'
miRNA:   3'- -CAGGUGCUUA-GGGuCUGGcuUGGCCg -5'
1506 3' -55.2 NC_001335.1 + 23016 0.7 0.463078
Target:  5'- -aCCugGggUgCUGGAUCGAucuucgcucugaccGCCGGCa -3'
miRNA:   3'- caGGugCuuAgGGUCUGGCU--------------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 28928 0.71 0.43663
Target:  5'- uGUCCGCGAgcuGUCaCCGGcaGCC--GCCGGCc -3'
miRNA:   3'- -CAGGUGCU---UAG-GGUC--UGGcuUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 11515 0.72 0.363703
Target:  5'- --gCACGAccggccagaagAUCCCGcACUGGACCGGCg -3'
miRNA:   3'- cagGUGCU-----------UAGGGUcUGGCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 40655 0.73 0.338617
Target:  5'- --aCGCGGAgaggCCCAGgaucGCCGAuCCGGCg -3'
miRNA:   3'- cagGUGCUUa---GGGUC----UGGCUuGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 34887 0.75 0.238438
Target:  5'- cGUCCACGA--CCCucucGACCGuuuCCGGCc -3'
miRNA:   3'- -CAGGUGCUuaGGGu---CUGGCuu-GGCCG- -5'
1506 3' -55.2 NC_001335.1 + 36230 0.66 0.7407
Target:  5'- uUCUA-GAccUCCCAGACUcggccgucgaccgaGAACCGGCc -3'
miRNA:   3'- cAGGUgCUu-AGGGUCUGG--------------CUUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.