miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1508 3' -56 NC_001335.1 + 14400 0.69 0.505963
Target:  5'- -gGCCGGCGuAGgagcaGCGGUGCC-UGCGCa -3'
miRNA:   3'- ggUGGUCGC-UC-----UGUCGCGGaAUGCGg -5'
1508 3' -56 NC_001335.1 + 34577 0.69 0.505963
Target:  5'- gCCACgAcUGGGcCGGUGCC-UACGCCa -3'
miRNA:   3'- -GGUGgUcGCUCuGUCGCGGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 16623 0.69 0.495663
Target:  5'- gCCGgUAGCGAGcACAGgGCCgagGC-CCg -3'
miRNA:   3'- -GGUgGUCGCUC-UGUCgCGGaa-UGcGG- -5'
1508 3' -56 NC_001335.1 + 18487 0.7 0.465359
Target:  5'- cCCACCgagcccugaAGCGAGACAuCGUCUUugGg- -3'
miRNA:   3'- -GGUGG---------UCGCUCUGUcGCGGAAugCgg -5'
1508 3' -56 NC_001335.1 + 28579 0.7 0.455473
Target:  5'- gUCGCCuGCGGGAagguGGCGCaCUcgGCGCUc -3'
miRNA:   3'- -GGUGGuCGCUCUg---UCGCG-GAa-UGCGG- -5'
1508 3' -56 NC_001335.1 + 48250 0.7 0.445701
Target:  5'- -uGCCAGCGuGgaccaccuuGCGGCGCUc-GCGCCg -3'
miRNA:   3'- ggUGGUCGCuC---------UGUCGCGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 38497 0.7 0.436047
Target:  5'- aCugCGGC-AGACGGCGUUUcguCGCCg -3'
miRNA:   3'- gGugGUCGcUCUGUCGCGGAau-GCGG- -5'
1508 3' -56 NC_001335.1 + 48853 0.7 0.426515
Target:  5'- aCCACCu-CGAGGCuuGCGCCgccCGCUa -3'
miRNA:   3'- -GGUGGucGCUCUGu-CGCGGaauGCGG- -5'
1508 3' -56 NC_001335.1 + 14065 0.7 0.426515
Target:  5'- aCCACCGGC-AGcguguGCAGCGUCggUGCGUUg -3'
miRNA:   3'- -GGUGGUCGcUC-----UGUCGCGGa-AUGCGG- -5'
1508 3' -56 NC_001335.1 + 10750 0.71 0.407828
Target:  5'- gCCGCguGCuAGGCGGCGUCggaGCGCg -3'
miRNA:   3'- -GGUGguCGcUCUGUCGCGGaa-UGCGg -5'
1508 3' -56 NC_001335.1 + 4080 0.71 0.407828
Target:  5'- gCCgACCGGCGAGGCAGcCGgCggcgAUGCa -3'
miRNA:   3'- -GG-UGGUCGCUCUGUC-GCgGaa--UGCGg -5'
1508 3' -56 NC_001335.1 + 9213 0.71 0.402322
Target:  5'- cCCAUCAGCucGGCGGuCGCCUgcaucaacaugaggaUGCGCg -3'
miRNA:   3'- -GGUGGUCGcuCUGUC-GCGGA---------------AUGCGg -5'
1508 3' -56 NC_001335.1 + 31843 0.71 0.398678
Target:  5'- -gGCCcGCGAGGCAGCGCgagCUguccUGCCg -3'
miRNA:   3'- ggUGGuCGCUCUGUCGCG---GAau--GCGG- -5'
1508 3' -56 NC_001335.1 + 13800 0.71 0.396865
Target:  5'- -uGCCAGCGAagaagccaGACGGCGCgUggccgaacucaaGCGCCa -3'
miRNA:   3'- ggUGGUCGCU--------CUGUCGCGgAa-----------UGCGG- -5'
1508 3' -56 NC_001335.1 + 29328 0.71 0.389662
Target:  5'- uCCAguCCGaCGAcGGCAGCGUC-UGCGCCg -3'
miRNA:   3'- -GGU--GGUcGCU-CUGUCGCGGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 17143 0.71 0.389662
Target:  5'- gCAUgAGCGAcGGCAGCaucggcuggagaGCCUgcaGCGCCg -3'
miRNA:   3'- gGUGgUCGCU-CUGUCG------------CGGAa--UGCGG- -5'
1508 3' -56 NC_001335.1 + 16388 0.71 0.386983
Target:  5'- aCCGucuCCAGCgucggggcagcgucGAGGCGGCuGCCUUgAUGCCg -3'
miRNA:   3'- -GGU---GGUCG--------------CUCUGUCG-CGGAA-UGCGG- -5'
1508 3' -56 NC_001335.1 + 39701 0.72 0.354956
Target:  5'- cCCAggcCCAGCGGucugcgaugucGuCAGCGCCgcgaGCGCCg -3'
miRNA:   3'- -GGU---GGUCGCU-----------CuGUCGCGGaa--UGCGG- -5'
1508 3' -56 NC_001335.1 + 824 0.72 0.330392
Target:  5'- aCACCAGCGGGAgCGGUagacguuccauaGCU--GCGCCg -3'
miRNA:   3'- gGUGGUCGCUCU-GUCG------------CGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 25115 0.73 0.299625
Target:  5'- uCCuCCAGCGuGAUGGCGCUggcgGCuGCCu -3'
miRNA:   3'- -GGuGGUCGCuCUGUCGCGGaa--UG-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.