miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1508 3' -56 NC_001335.1 + 51795 0.67 0.612867
Target:  5'- -gACCAGCG-GAUAGCGgcacguagugccCUUUACaGCCa -3'
miRNA:   3'- ggUGGUCGCuCUGUCGC------------GGAAUG-CGG- -5'
1508 3' -56 NC_001335.1 + 25210 0.67 0.601966
Target:  5'- -gACCgGGCGAagaaGGCAGcCGCCa-GCGCCa -3'
miRNA:   3'- ggUGG-UCGCU----CUGUC-GCGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 42196 0.67 0.601966
Target:  5'- aUCACCAGCGcGuGCAGCuCCUc-UGCCg -3'
miRNA:   3'- -GGUGGUCGCuC-UGUCGcGGAauGCGG- -5'
1508 3' -56 NC_001335.1 + 45089 0.67 0.600877
Target:  5'- gCUACCgAGUGGGGCAG-GCCgcuacauUUACGaCCg -3'
miRNA:   3'- -GGUGG-UCGCUCUGUCgCGG-------AAUGC-GG- -5'
1508 3' -56 NC_001335.1 + 17905 0.67 0.600877
Target:  5'- uCCAgcCCAGCGAGAaucccggagggguCGGUGCCcgacuccauCGCCc -3'
miRNA:   3'- -GGU--GGUCGCUCU-------------GUCGCGGaau------GCGG- -5'
1508 3' -56 NC_001335.1 + 31082 0.67 0.5987
Target:  5'- -gGCCGGUcucaggcuugaccuGAGcCAGCGCCU--UGCCg -3'
miRNA:   3'- ggUGGUCG--------------CUCuGUCGCGGAauGCGG- -5'
1508 3' -56 NC_001335.1 + 9003 0.68 0.580248
Target:  5'- uCCAUCGGCGuGuACAGCGUg--GCaGCCu -3'
miRNA:   3'- -GGUGGUCGCuC-UGUCGCGgaaUG-CGG- -5'
1508 3' -56 NC_001335.1 + 16258 0.68 0.569449
Target:  5'- gCCgACCAGCGGagcugcuacggcGACGaUGCC-UACGCCu -3'
miRNA:   3'- -GG-UGGUCGCU------------CUGUcGCGGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 50652 0.68 0.569449
Target:  5'- aUCACCAuGCGAGuCaccugGGCaCCUaACGCCg -3'
miRNA:   3'- -GGUGGU-CGCUCuG-----UCGcGGAaUGCGG- -5'
1508 3' -56 NC_001335.1 + 4828 0.68 0.568372
Target:  5'- gCC-CCgaGGCGGGcCAGCGgCCUUGCcgaucaaGCCg -3'
miRNA:   3'- -GGuGG--UCGCUCuGUCGC-GGAAUG-------CGG- -5'
1508 3' -56 NC_001335.1 + 17012 0.68 0.5587
Target:  5'- cUCGCCAGCGucuggaAGGcCGGCGUga-GCGCCg -3'
miRNA:   3'- -GGUGGUCGC------UCU-GUCGCGgaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 39039 0.68 0.557628
Target:  5'- uCUGCCAGCGAGcCaacgguaagaagaAGCGCCUgucgguCGaCCa -3'
miRNA:   3'- -GGUGGUCGCUCuG-------------UCGCGGAau----GC-GG- -5'
1508 3' -56 NC_001335.1 + 37854 0.68 0.548009
Target:  5'- --uCgGGCGuucGGCAGCGUCUU-CGCCa -3'
miRNA:   3'- gguGgUCGCu--CUGUCGCGGAAuGCGG- -5'
1508 3' -56 NC_001335.1 + 24637 0.68 0.548009
Target:  5'- uCC-CCAcGCGGGA-AGCGCCacgGCGCa -3'
miRNA:   3'- -GGuGGU-CGCUCUgUCGCGGaa-UGCGg -5'
1508 3' -56 NC_001335.1 + 23247 0.68 0.526829
Target:  5'- cCUACCGGCGcAGGCGGUggaGCUgucaACGUCg -3'
miRNA:   3'- -GGUGGUCGC-UCUGUCG---CGGaa--UGCGG- -5'
1508 3' -56 NC_001335.1 + 4589 0.68 0.526829
Target:  5'- gUCACCcGCGAGAgAGCGCagUGgGUCc -3'
miRNA:   3'- -GGUGGuCGCUCUgUCGCGgaAUgCGG- -5'
1508 3' -56 NC_001335.1 + 47994 0.68 0.526829
Target:  5'- aCACCAGCGcaGGACAuGCaGUCgcugGCGCg -3'
miRNA:   3'- gGUGGUCGC--UCUGU-CG-CGGaa--UGCGg -5'
1508 3' -56 NC_001335.1 + 27484 0.68 0.526829
Target:  5'- cCCACCucucCGAGGCAGaCGCCgacuucaUAUGCg -3'
miRNA:   3'- -GGUGGuc--GCUCUGUC-GCGGa------AUGCGg -5'
1508 3' -56 NC_001335.1 + 19521 0.68 0.522629
Target:  5'- cUCGCCAGCGAccaGGCcGCGCaggcggaaguCGCCa -3'
miRNA:   3'- -GGUGGUCGCU---CUGuCGCGgaau------GCGG- -5'
1508 3' -56 NC_001335.1 + 355 0.69 0.516353
Target:  5'- aCCGCCGGaucucaAGGCcGCGCCagUGCGCg -3'
miRNA:   3'- -GGUGGUCgc----UCUGuCGCGGa-AUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.