miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1508 3' -56 NC_001335.1 + 48853 0.7 0.426515
Target:  5'- aCCACCu-CGAGGCuuGCGCCgccCGCUa -3'
miRNA:   3'- -GGUGGucGCUCUGu-CGCGGaauGCGG- -5'
1508 3' -56 NC_001335.1 + 38497 0.7 0.436047
Target:  5'- aCugCGGC-AGACGGCGUUUcguCGCCg -3'
miRNA:   3'- gGugGUCGcUCUGUCGCGGAau-GCGG- -5'
1508 3' -56 NC_001335.1 + 48250 0.7 0.445701
Target:  5'- -uGCCAGCGuGgaccaccuuGCGGCGCUc-GCGCCg -3'
miRNA:   3'- ggUGGUCGCuC---------UGUCGCGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 28579 0.7 0.455473
Target:  5'- gUCGCCuGCGGGAagguGGCGCaCUcgGCGCUc -3'
miRNA:   3'- -GGUGGuCGCUCUg---UCGCG-GAa-UGCGG- -5'
1508 3' -56 NC_001335.1 + 18487 0.7 0.465359
Target:  5'- cCCACCgagcccugaAGCGAGACAuCGUCUUugGg- -3'
miRNA:   3'- -GGUGG---------UCGCUCUGUcGCGGAAugCgg -5'
1508 3' -56 NC_001335.1 + 16623 0.69 0.495663
Target:  5'- gCCGgUAGCGAGcACAGgGCCgagGC-CCg -3'
miRNA:   3'- -GGUgGUCGCUC-UGUCgCGGaa-UGcGG- -5'
1508 3' -56 NC_001335.1 + 14400 0.69 0.505963
Target:  5'- -gGCCGGCGuAGgagcaGCGGUGCC-UGCGCa -3'
miRNA:   3'- ggUGGUCGC-UC-----UGUCGCGGaAUGCGg -5'
1508 3' -56 NC_001335.1 + 34577 0.69 0.505963
Target:  5'- gCCACgAcUGGGcCGGUGCC-UACGCCa -3'
miRNA:   3'- -GGUGgUcGCUCuGUCGCGGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 355 0.69 0.516353
Target:  5'- aCCGCCGGaucucaAGGCcGCGCCagUGCGCg -3'
miRNA:   3'- -GGUGGUCgc----UCUGuCGCGGa-AUGCGg -5'
1508 3' -56 NC_001335.1 + 19521 0.68 0.522629
Target:  5'- cUCGCCAGCGAccaGGCcGCGCaggcggaaguCGCCa -3'
miRNA:   3'- -GGUGGUCGCU---CUGuCGCGgaau------GCGG- -5'
1508 3' -56 NC_001335.1 + 23247 0.68 0.526829
Target:  5'- cCUACCGGCGcAGGCGGUggaGCUgucaACGUCg -3'
miRNA:   3'- -GGUGGUCGC-UCUGUCG---CGGaa--UGCGG- -5'
1508 3' -56 NC_001335.1 + 47994 0.68 0.526829
Target:  5'- aCACCAGCGcaGGACAuGCaGUCgcugGCGCg -3'
miRNA:   3'- gGUGGUCGC--UCUGU-CG-CGGaa--UGCGg -5'
1508 3' -56 NC_001335.1 + 27484 0.68 0.526829
Target:  5'- cCCACCucucCGAGGCAGaCGCCgacuucaUAUGCg -3'
miRNA:   3'- -GGUGGuc--GCUCUGUC-GCGGa------AUGCGg -5'
1508 3' -56 NC_001335.1 + 4589 0.68 0.526829
Target:  5'- gUCACCcGCGAGAgAGCGCagUGgGUCc -3'
miRNA:   3'- -GGUGGuCGCUCUgUCGCGgaAUgCGG- -5'
1508 3' -56 NC_001335.1 + 37854 0.68 0.548009
Target:  5'- --uCgGGCGuucGGCAGCGUCUU-CGCCa -3'
miRNA:   3'- gguGgUCGCu--CUGUCGCGGAAuGCGG- -5'
1508 3' -56 NC_001335.1 + 24637 0.68 0.548009
Target:  5'- uCC-CCAcGCGGGA-AGCGCCacgGCGCa -3'
miRNA:   3'- -GGuGGU-CGCUCUgUCGCGGaa-UGCGg -5'
1508 3' -56 NC_001335.1 + 39039 0.68 0.557628
Target:  5'- uCUGCCAGCGAGcCaacgguaagaagaAGCGCCUgucgguCGaCCa -3'
miRNA:   3'- -GGUGGUCGCUCuG-------------UCGCGGAau----GC-GG- -5'
1508 3' -56 NC_001335.1 + 17012 0.68 0.5587
Target:  5'- cUCGCCAGCGucuggaAGGcCGGCGUga-GCGCCg -3'
miRNA:   3'- -GGUGGUCGC------UCU-GUCGCGgaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 4828 0.68 0.568372
Target:  5'- gCC-CCgaGGCGGGcCAGCGgCCUUGCcgaucaaGCCg -3'
miRNA:   3'- -GGuGG--UCGCUCuGUCGC-GGAAUG-------CGG- -5'
1508 3' -56 NC_001335.1 + 50652 0.68 0.569449
Target:  5'- aUCACCAuGCGAGuCaccugGGCaCCUaACGCCg -3'
miRNA:   3'- -GGUGGU-CGCUCuG-----UCGcGGAaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.