miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1508 3' -56 NC_001335.1 + 39360 1.13 0.000473
Target:  5'- cCCACCAGCGAGACAGCGCCUUACGCCc -3'
miRNA:   3'- -GGUGGUCGCUCUGUCGCGGAAUGCGG- -5'
1508 3' -56 NC_001335.1 + 16658 0.8 0.10288
Target:  5'- gCGCCGGCGuuGGACAGCGUCaggaACGCCu -3'
miRNA:   3'- gGUGGUCGC--UCUGUCGCGGaa--UGCGG- -5'
1508 3' -56 NC_001335.1 + 11872 0.76 0.178508
Target:  5'- uCCACCAGCGAGACcuccuuGGUGgUcUGCGCUa -3'
miRNA:   3'- -GGUGGUCGCUCUG------UCGCgGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 51546 0.76 0.188334
Target:  5'- -gACCGGUGAGAUcaggcggguAGCGCaUUACGCCa -3'
miRNA:   3'- ggUGGUCGCUCUG---------UCGCGgAAUGCGG- -5'
1508 3' -56 NC_001335.1 + 11314 0.75 0.209419
Target:  5'- gUCACCguucAGCGGGAuCGGCGgCUUACcGCCg -3'
miRNA:   3'- -GGUGG----UCGCUCU-GUCGCgGAAUG-CGG- -5'
1508 3' -56 NC_001335.1 + 28676 0.75 0.215
Target:  5'- gCGCCAagGAGAUggAGCGCCgagUGCGCCa -3'
miRNA:   3'- gGUGGUcgCUCUG--UCGCGGa--AUGCGG- -5'
1508 3' -56 NC_001335.1 + 13393 0.75 0.215
Target:  5'- -gACCAGCG-GugGGCGCuCUUcggagACGCCa -3'
miRNA:   3'- ggUGGUCGCuCugUCGCG-GAA-----UGCGG- -5'
1508 3' -56 NC_001335.1 + 50864 0.74 0.270437
Target:  5'- aCCGCCAuccguaaggcaccGCGAGcCAacGCGCCcaaggUGCGCCg -3'
miRNA:   3'- -GGUGGU-------------CGCUCuGU--CGCGGa----AUGCGG- -5'
1508 3' -56 NC_001335.1 + 25115 0.73 0.299625
Target:  5'- uCCuCCAGCGuGAUGGCGCUggcgGCuGCCu -3'
miRNA:   3'- -GGuGGUCGCuCUGUCGCGGaa--UG-CGG- -5'
1508 3' -56 NC_001335.1 + 824 0.72 0.330392
Target:  5'- aCACCAGCGGGAgCGGUagacguuccauaGCU--GCGCCg -3'
miRNA:   3'- gGUGGUCGCUCU-GUCG------------CGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 39701 0.72 0.354956
Target:  5'- cCCAggcCCAGCGGucugcgaugucGuCAGCGCCgcgaGCGCCg -3'
miRNA:   3'- -GGU---GGUCGCU-----------CuGUCGCGGaa--UGCGG- -5'
1508 3' -56 NC_001335.1 + 16388 0.71 0.386983
Target:  5'- aCCGucuCCAGCgucggggcagcgucGAGGCGGCuGCCUUgAUGCCg -3'
miRNA:   3'- -GGU---GGUCG--------------CUCUGUCG-CGGAA-UGCGG- -5'
1508 3' -56 NC_001335.1 + 17143 0.71 0.389662
Target:  5'- gCAUgAGCGAcGGCAGCaucggcuggagaGCCUgcaGCGCCg -3'
miRNA:   3'- gGUGgUCGCU-CUGUCG------------CGGAa--UGCGG- -5'
1508 3' -56 NC_001335.1 + 29328 0.71 0.389662
Target:  5'- uCCAguCCGaCGAcGGCAGCGUC-UGCGCCg -3'
miRNA:   3'- -GGU--GGUcGCU-CUGUCGCGGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 13800 0.71 0.396865
Target:  5'- -uGCCAGCGAagaagccaGACGGCGCgUggccgaacucaaGCGCCa -3'
miRNA:   3'- ggUGGUCGCU--------CUGUCGCGgAa-----------UGCGG- -5'
1508 3' -56 NC_001335.1 + 31843 0.71 0.398678
Target:  5'- -gGCCcGCGAGGCAGCGCgagCUguccUGCCg -3'
miRNA:   3'- ggUGGuCGCUCUGUCGCG---GAau--GCGG- -5'
1508 3' -56 NC_001335.1 + 9213 0.71 0.402322
Target:  5'- cCCAUCAGCucGGCGGuCGCCUgcaucaacaugaggaUGCGCg -3'
miRNA:   3'- -GGUGGUCGcuCUGUC-GCGGA---------------AUGCGg -5'
1508 3' -56 NC_001335.1 + 10750 0.71 0.407828
Target:  5'- gCCGCguGCuAGGCGGCGUCggaGCGCg -3'
miRNA:   3'- -GGUGguCGcUCUGUCGCGGaa-UGCGg -5'
1508 3' -56 NC_001335.1 + 4080 0.71 0.407828
Target:  5'- gCCgACCGGCGAGGCAGcCGgCggcgAUGCa -3'
miRNA:   3'- -GG-UGGUCGCUCUGUC-GCgGaa--UGCGg -5'
1508 3' -56 NC_001335.1 + 14065 0.7 0.426515
Target:  5'- aCCACCGGC-AGcguguGCAGCGUCggUGCGUUg -3'
miRNA:   3'- -GGUGGUCGcUC-----UGUCGCGGa-AUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.