miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1508 3' -56 NC_001335.1 + 39360 1.13 0.000473
Target:  5'- cCCACCAGCGAGACAGCGCCUUACGCCc -3'
miRNA:   3'- -GGUGGUCGCUCUGUCGCGGAAUGCGG- -5'
1508 3' -56 NC_001335.1 + 31082 0.67 0.5987
Target:  5'- -gGCCGGUcucaggcuugaccuGAGcCAGCGCCU--UGCCg -3'
miRNA:   3'- ggUGGUCG--------------CUCuGUCGCGGAauGCGG- -5'
1508 3' -56 NC_001335.1 + 10298 0.67 0.623784
Target:  5'- gCCACCGggcGCGAaACAuGCGCCUggugucugAUGCUc -3'
miRNA:   3'- -GGUGGU---CGCUcUGU-CGCGGAa-------UGCGG- -5'
1508 3' -56 NC_001335.1 + 24807 0.66 0.699858
Target:  5'- uCCucaGGCGu--CAGCGCCUcUACGUCg -3'
miRNA:   3'- -GGuggUCGCucuGUCGCGGA-AUGCGG- -5'
1508 3' -56 NC_001335.1 + 29328 0.71 0.389662
Target:  5'- uCCAguCCGaCGAcGGCAGCGUC-UGCGCCg -3'
miRNA:   3'- -GGU--GGUcGCU-CUGUCGCGGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 4080 0.71 0.407828
Target:  5'- gCCgACCGGCGAGGCAGcCGgCggcgAUGCa -3'
miRNA:   3'- -GG-UGGUCGCUCUGUC-GCgGaa--UGCGg -5'
1508 3' -56 NC_001335.1 + 48250 0.7 0.445701
Target:  5'- -uGCCAGCGuGgaccaccuuGCGGCGCUc-GCGCCg -3'
miRNA:   3'- ggUGGUCGCuC---------UGUCGCGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 28579 0.7 0.455473
Target:  5'- gUCGCCuGCGGGAagguGGCGCaCUcgGCGCUc -3'
miRNA:   3'- -GGUGGuCGCUCUg---UCGCG-GAa-UGCGG- -5'
1508 3' -56 NC_001335.1 + 4589 0.68 0.526829
Target:  5'- gUCACCcGCGAGAgAGCGCagUGgGUCc -3'
miRNA:   3'- -GGUGGuCGCUCUgUCGCGgaAUgCGG- -5'
1508 3' -56 NC_001335.1 + 4828 0.68 0.568372
Target:  5'- gCC-CCgaGGCGGGcCAGCGgCCUUGCcgaucaaGCCg -3'
miRNA:   3'- -GGuGG--UCGCUCuGUCGC-GGAAUG-------CGG- -5'
1508 3' -56 NC_001335.1 + 47994 0.68 0.526829
Target:  5'- aCACCAGCGcaGGACAuGCaGUCgcugGCGCg -3'
miRNA:   3'- gGUGGUCGC--UCUGU-CG-CGGaa--UGCGg -5'
1508 3' -56 NC_001335.1 + 355 0.69 0.516353
Target:  5'- aCCGCCGGaucucaAGGCcGCGCCagUGCGCg -3'
miRNA:   3'- -GGUGGUCgc----UCUGuCGCGGa-AUGCGg -5'
1508 3' -56 NC_001335.1 + 13393 0.75 0.215
Target:  5'- -gACCAGCG-GugGGCGCuCUUcggagACGCCa -3'
miRNA:   3'- ggUGGUCGCuCugUCGCG-GAA-----UGCGG- -5'
1508 3' -56 NC_001335.1 + 37854 0.68 0.548009
Target:  5'- --uCgGGCGuucGGCAGCGUCUU-CGCCa -3'
miRNA:   3'- gguGgUCGCu--CUGUCGCGGAAuGCGG- -5'
1508 3' -56 NC_001335.1 + 25115 0.73 0.299625
Target:  5'- uCCuCCAGCGuGAUGGCGCUggcgGCuGCCu -3'
miRNA:   3'- -GGuGGUCGCuCUGUCGCGGaa--UG-CGG- -5'
1508 3' -56 NC_001335.1 + 18487 0.7 0.465359
Target:  5'- cCCACCgagcccugaAGCGAGACAuCGUCUUugGg- -3'
miRNA:   3'- -GGUGG---------UCGCUCUGUcGCGGAAugCgg -5'
1508 3' -56 NC_001335.1 + 24637 0.68 0.548009
Target:  5'- uCC-CCAcGCGGGA-AGCGCCacgGCGCa -3'
miRNA:   3'- -GGuGGU-CGCUCUgUCGCGGaa-UGCGg -5'
1508 3' -56 NC_001335.1 + 42196 0.67 0.601966
Target:  5'- aUCACCAGCGcGuGCAGCuCCUc-UGCCg -3'
miRNA:   3'- -GGUGGUCGCuC-UGUCGcGGAauGCGG- -5'
1508 3' -56 NC_001335.1 + 39701 0.72 0.354956
Target:  5'- cCCAggcCCAGCGGucugcgaugucGuCAGCGCCgcgaGCGCCg -3'
miRNA:   3'- -GGU---GGUCGCU-----------CuGUCGCGGaa--UGCGG- -5'
1508 3' -56 NC_001335.1 + 38497 0.7 0.436047
Target:  5'- aCugCGGC-AGACGGCGUUUcguCGCCg -3'
miRNA:   3'- gGugGUCGcUCUGUCGCGGAau-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.