miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1508 3' -56 NC_001335.1 + 17012 0.68 0.5587
Target:  5'- cUCGCCAGCGucuggaAGGcCGGCGUga-GCGCCg -3'
miRNA:   3'- -GGUGGUCGC------UCU-GUCGCGgaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 37237 0.67 0.63471
Target:  5'- cUCGCCAGUGGGACAccuUGCUggACGUUc -3'
miRNA:   3'- -GGUGGUCGCUCUGUc--GCGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 51795 0.67 0.612867
Target:  5'- -gACCAGCG-GAUAGCGgcacguagugccCUUUACaGCCa -3'
miRNA:   3'- ggUGGUCGCuCUGUCGC------------GGAAUG-CGG- -5'
1508 3' -56 NC_001335.1 + 25210 0.67 0.601966
Target:  5'- -gACCgGGCGAagaaGGCAGcCGCCa-GCGCCa -3'
miRNA:   3'- ggUGG-UCGCU----CUGUC-GCGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 17905 0.67 0.600877
Target:  5'- uCCAgcCCAGCGAGAaucccggagggguCGGUGCCcgacuccauCGCCc -3'
miRNA:   3'- -GGU--GGUCGCUCU-------------GUCGCGGaau------GCGG- -5'
1508 3' -56 NC_001335.1 + 45089 0.67 0.600877
Target:  5'- gCUACCgAGUGGGGCAG-GCCgcuacauUUACGaCCg -3'
miRNA:   3'- -GGUGG-UCGCUCUGUCgCGG-------AAUGC-GG- -5'
1508 3' -56 NC_001335.1 + 9003 0.68 0.580248
Target:  5'- uCCAUCGGCGuGuACAGCGUg--GCaGCCu -3'
miRNA:   3'- -GGUGGUCGCuC-UGUCGCGgaaUG-CGG- -5'
1508 3' -56 NC_001335.1 + 16258 0.68 0.569449
Target:  5'- gCCgACCAGCGGagcugcuacggcGACGaUGCC-UACGCCu -3'
miRNA:   3'- -GG-UGGUCGCU------------CUGUcGCGGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 50652 0.68 0.569449
Target:  5'- aUCACCAuGCGAGuCaccugGGCaCCUaACGCCg -3'
miRNA:   3'- -GGUGGU-CGCUCuG-----UCGcGGAaUGCGG- -5'
1508 3' -56 NC_001335.1 + 17404 0.66 0.656543
Target:  5'- gCGCCAGCaacgcuGAcCAGaGCC-UGCGCCa -3'
miRNA:   3'- gGUGGUCGcu----CU-GUCgCGGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 757 0.66 0.678287
Target:  5'- --uCCGGCGuGaguGCAGCGCCgaccugcuUUACGCg -3'
miRNA:   3'- gguGGUCGCuC---UGUCGCGG--------AAUGCGg -5'
1508 3' -56 NC_001335.1 + 46477 0.66 0.678287
Target:  5'- uCgGCCGGCGGGGgAGCGUUgg-UGCUc -3'
miRNA:   3'- -GgUGGUCGCUCUgUCGCGGaauGCGG- -5'
1508 3' -56 NC_001335.1 + 11947 0.66 0.699858
Target:  5'- aCCAaCAGCGAcagggcguuGACGGCGaCC--GCGUCg -3'
miRNA:   3'- -GGUgGUCGCU---------CUGUCGC-GGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 47003 0.66 0.699858
Target:  5'- gCGCCAGgcCGaAGACGugGCCggUACGCCg -3'
miRNA:   3'- gGUGGUC--GC-UCUGUcgCGGa-AUGCGG- -5'
1508 3' -56 NC_001335.1 + 8392 0.66 0.699858
Target:  5'- cUCGCCcgaacGCGAgGACAGCGCagacugcaGCGUCg -3'
miRNA:   3'- -GGUGGu----CGCU-CUGUCGCGgaa-----UGCGG- -5'
1508 3' -56 NC_001335.1 + 1660 0.66 0.698785
Target:  5'- gCCACCGGCuGAGAagccgaccucgaaCAGCGaCUUGaGUCg -3'
miRNA:   3'- -GGUGGUCG-CUCU-------------GUCGCgGAAUgCGG- -5'
1508 3' -56 NC_001335.1 + 46210 0.66 0.689099
Target:  5'- cCCGCuCuGUGAGuaccggagcGCAGCGCacauCGCCg -3'
miRNA:   3'- -GGUG-GuCGCUC---------UGUCGCGgaauGCGG- -5'
1508 3' -56 NC_001335.1 + 21267 0.66 0.689099
Target:  5'- aCGCCAGCaaucaucggGAGAUuGCGUa--GCGCCc -3'
miRNA:   3'- gGUGGUCG---------CUCUGuCGCGgaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 33069 0.66 0.689099
Target:  5'- -aGCCGuCGaAGACGGUGUCgaugaagagUGCGCCa -3'
miRNA:   3'- ggUGGUcGC-UCUGUCGCGGa--------AUGCGG- -5'
1508 3' -56 NC_001335.1 + 369 0.66 0.678287
Target:  5'- -gGCCGGUcuuuAGAUgAGCGCCUggugGCGCUc -3'
miRNA:   3'- ggUGGUCGc---UCUG-UCGCGGAa---UGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.