miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1508 3' -56 NC_001335.1 + 355 0.69 0.516353
Target:  5'- aCCGCCGGaucucaAGGCcGCGCCagUGCGCg -3'
miRNA:   3'- -GGUGGUCgc----UCUGuCGCGGa-AUGCGg -5'
1508 3' -56 NC_001335.1 + 369 0.66 0.678287
Target:  5'- -gGCCGGUcuuuAGAUgAGCGCCUggugGCGCUc -3'
miRNA:   3'- ggUGGUCGc---UCUG-UCGCGGAa---UGCGG- -5'
1508 3' -56 NC_001335.1 + 757 0.66 0.678287
Target:  5'- --uCCGGCGuGaguGCAGCGCCgaccugcuUUACGCg -3'
miRNA:   3'- gguGGUCGCuC---UGUCGCGG--------AAUGCGg -5'
1508 3' -56 NC_001335.1 + 824 0.72 0.330392
Target:  5'- aCACCAGCGGGAgCGGUagacguuccauaGCU--GCGCCg -3'
miRNA:   3'- gGUGGUCGCUCU-GUCG------------CGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 1660 0.66 0.698785
Target:  5'- gCCACCGGCuGAGAagccgaccucgaaCAGCGaCUUGaGUCg -3'
miRNA:   3'- -GGUGGUCG-CUCU-------------GUCGCgGAAUgCGG- -5'
1508 3' -56 NC_001335.1 + 4080 0.71 0.407828
Target:  5'- gCCgACCGGCGAGGCAGcCGgCggcgAUGCa -3'
miRNA:   3'- -GG-UGGUCGCUCUGUC-GCgGaa--UGCGg -5'
1508 3' -56 NC_001335.1 + 4589 0.68 0.526829
Target:  5'- gUCACCcGCGAGAgAGCGCagUGgGUCc -3'
miRNA:   3'- -GGUGGuCGCUCUgUCGCGgaAUgCGG- -5'
1508 3' -56 NC_001335.1 + 4828 0.68 0.568372
Target:  5'- gCC-CCgaGGCGGGcCAGCGgCCUUGCcgaucaaGCCg -3'
miRNA:   3'- -GGuGG--UCGCUCuGUCGC-GGAAUG-------CGG- -5'
1508 3' -56 NC_001335.1 + 7200 0.66 0.656543
Target:  5'- -aGCCGGUggccguauuGAGGCAGCGaCCUcgaGCCc -3'
miRNA:   3'- ggUGGUCG---------CUCUGUCGC-GGAaugCGG- -5'
1508 3' -56 NC_001335.1 + 7796 0.66 0.704144
Target:  5'- uCCugCGGUGAGagccacgaguccucaGCGGCGuuuaCCUgauucaggaacuUGCGCCg -3'
miRNA:   3'- -GGugGUCGCUC---------------UGUCGC----GGA------------AUGCGG- -5'
1508 3' -56 NC_001335.1 + 8392 0.66 0.699858
Target:  5'- cUCGCCcgaacGCGAgGACAGCGCagacugcaGCGUCg -3'
miRNA:   3'- -GGUGGu----CGCU-CUGUCGCGgaa-----UGCGG- -5'
1508 3' -56 NC_001335.1 + 9003 0.68 0.580248
Target:  5'- uCCAUCGGCGuGuACAGCGUg--GCaGCCu -3'
miRNA:   3'- -GGUGGUCGCuC-UGUCGCGgaaUG-CGG- -5'
1508 3' -56 NC_001335.1 + 9213 0.71 0.402322
Target:  5'- cCCAUCAGCucGGCGGuCGCCUgcaucaacaugaggaUGCGCg -3'
miRNA:   3'- -GGUGGUCGcuCUGUC-GCGGA---------------AUGCGg -5'
1508 3' -56 NC_001335.1 + 10298 0.67 0.623784
Target:  5'- gCCACCGggcGCGAaACAuGCGCCUggugucugAUGCUc -3'
miRNA:   3'- -GGUGGU---CGCUcUGU-CGCGGAa-------UGCGG- -5'
1508 3' -56 NC_001335.1 + 10750 0.71 0.407828
Target:  5'- gCCGCguGCuAGGCGGCGUCggaGCGCg -3'
miRNA:   3'- -GGUGguCGcUCUGUCGCGGaa-UGCGg -5'
1508 3' -56 NC_001335.1 + 11314 0.75 0.209419
Target:  5'- gUCACCguucAGCGGGAuCGGCGgCUUACcGCCg -3'
miRNA:   3'- -GGUGG----UCGCUCU-GUCGCgGAAUG-CGG- -5'
1508 3' -56 NC_001335.1 + 11872 0.76 0.178508
Target:  5'- uCCACCAGCGAGACcuccuuGGUGgUcUGCGCUa -3'
miRNA:   3'- -GGUGGUCGCUCUG------UCGCgGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 11947 0.66 0.699858
Target:  5'- aCCAaCAGCGAcagggcguuGACGGCGaCC--GCGUCg -3'
miRNA:   3'- -GGUgGUCGCU---------CUGUCGC-GGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 13393 0.75 0.215
Target:  5'- -gACCAGCG-GugGGCGCuCUUcggagACGCCa -3'
miRNA:   3'- ggUGGUCGCuCugUCGCG-GAA-----UGCGG- -5'
1508 3' -56 NC_001335.1 + 13800 0.71 0.396865
Target:  5'- -uGCCAGCGAagaagccaGACGGCGCgUggccgaacucaaGCGCCa -3'
miRNA:   3'- ggUGGUCGCU--------CUGUCGCGgAa-----------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.