miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1508 3' -56 NC_001335.1 + 39701 0.72 0.354956
Target:  5'- cCCAggcCCAGCGGucugcgaugucGuCAGCGCCgcgaGCGCCg -3'
miRNA:   3'- -GGU---GGUCGCU-----------CuGUCGCGGaa--UGCGG- -5'
1508 3' -56 NC_001335.1 + 20341 0.66 0.678287
Target:  5'- gCACCAGCccGAUAGCaCCccACGUCg -3'
miRNA:   3'- gGUGGUCGcuCUGUCGcGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 31082 0.67 0.5987
Target:  5'- -gGCCGGUcucaggcuugaccuGAGcCAGCGCCU--UGCCg -3'
miRNA:   3'- ggUGGUCG--------------CUCuGUCGCGGAauGCGG- -5'
1508 3' -56 NC_001335.1 + 25115 0.73 0.299625
Target:  5'- uCCuCCAGCGuGAUGGCGCUggcgGCuGCCu -3'
miRNA:   3'- -GGuGGUCGCuCUGUCGCGGaa--UG-CGG- -5'
1508 3' -56 NC_001335.1 + 13393 0.75 0.215
Target:  5'- -gACCAGCG-GugGGCGCuCUUcggagACGCCa -3'
miRNA:   3'- ggUGGUCGCuCugUCGCG-GAA-----UGCGG- -5'
1508 3' -56 NC_001335.1 + 39360 1.13 0.000473
Target:  5'- cCCACCAGCGAGACAGCGCCUUACGCCc -3'
miRNA:   3'- -GGUGGUCGCUCUGUCGCGGAAUGCGG- -5'
1508 3' -56 NC_001335.1 + 21267 0.66 0.689099
Target:  5'- aCGCCAGCaaucaucggGAGAUuGCGUa--GCGCCc -3'
miRNA:   3'- gGUGGUCG---------CUCUGuCGCGgaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 47003 0.66 0.699858
Target:  5'- gCGCCAGgcCGaAGACGugGCCggUACGCCg -3'
miRNA:   3'- gGUGGUC--GC-UCUGUcgCGGa-AUGCGG- -5'
1508 3' -56 NC_001335.1 + 10750 0.71 0.407828
Target:  5'- gCCGCguGCuAGGCGGCGUCggaGCGCg -3'
miRNA:   3'- -GGUGguCGcUCUGUCGCGGaa-UGCGg -5'
1508 3' -56 NC_001335.1 + 48853 0.7 0.426515
Target:  5'- aCCACCu-CGAGGCuuGCGCCgccCGCUa -3'
miRNA:   3'- -GGUGGucGCUCUGu-CGCGGaauGCGG- -5'
1508 3' -56 NC_001335.1 + 25210 0.67 0.601966
Target:  5'- -gACCgGGCGAagaaGGCAGcCGCCa-GCGCCa -3'
miRNA:   3'- ggUGG-UCGCU----CUGUC-GCGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 51795 0.67 0.612867
Target:  5'- -gACCAGCG-GAUAGCGgcacguagugccCUUUACaGCCa -3'
miRNA:   3'- ggUGGUCGCuCUGUCGC------------GGAAUG-CGG- -5'
1508 3' -56 NC_001335.1 + 37237 0.67 0.63471
Target:  5'- cUCGCCAGUGGGACAccuUGCUggACGUUc -3'
miRNA:   3'- -GGUGGUCGCUCUGUc--GCGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 17404 0.66 0.656543
Target:  5'- gCGCCAGCaacgcuGAcCAGaGCC-UGCGCCa -3'
miRNA:   3'- gGUGGUCGcu----CU-GUCgCGGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 46210 0.66 0.689099
Target:  5'- cCCGCuCuGUGAGuaccggagcGCAGCGCacauCGCCg -3'
miRNA:   3'- -GGUG-GuCGCUC---------UGUCGCGgaauGCGG- -5'
1508 3' -56 NC_001335.1 + 19521 0.68 0.522629
Target:  5'- cUCGCCAGCGAccaGGCcGCGCaggcggaaguCGCCa -3'
miRNA:   3'- -GGUGGUCGCU---CUGuCGCGgaau------GCGG- -5'
1508 3' -56 NC_001335.1 + 14400 0.69 0.505963
Target:  5'- -gGCCGGCGuAGgagcaGCGGUGCC-UGCGCa -3'
miRNA:   3'- ggUGGUCGC-UC-----UGUCGCGGaAUGCGg -5'
1508 3' -56 NC_001335.1 + 34577 0.69 0.505963
Target:  5'- gCCACgAcUGGGcCGGUGCC-UACGCCa -3'
miRNA:   3'- -GGUGgUcGCUCuGUCGCGGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 16623 0.69 0.495663
Target:  5'- gCCGgUAGCGAGcACAGgGCCgagGC-CCg -3'
miRNA:   3'- -GGUgGUCGCUC-UGUCgCGGaa-UGcGG- -5'
1508 3' -56 NC_001335.1 + 14065 0.7 0.426515
Target:  5'- aCCACCGGC-AGcguguGCAGCGUCggUGCGUUg -3'
miRNA:   3'- -GGUGGUCGcUC-----UGUCGCGGa-AUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.