miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1510 3' -50.6 NC_001335.1 + 12500 0.69 0.781954
Target:  5'- uUGGCGAACUCCucGGAaaccucGGCGAAa-- -3'
miRNA:   3'- gGCUGCUUGAGGuuCCU------UCGCUUcag -5'
1510 3' -50.6 NC_001335.1 + 7323 0.67 0.87641
Target:  5'- aCGACGAACgucgggcgguuacccUCCAucgacgcGGGGcuCGAGGUCg -3'
miRNA:   3'- gGCUGCUUG---------------AGGU-------UCCUucGCUUCAG- -5'
1510 3' -50.6 NC_001335.1 + 35478 0.67 0.874014
Target:  5'- gCCGcCGAuCUCCGAguucuuGGGAGgGAGGUg -3'
miRNA:   3'- -GGCuGCUuGAGGUU------CCUUCgCUUCAg -5'
1510 3' -50.6 NC_001335.1 + 23779 0.68 0.865855
Target:  5'- cCCGcCGccucCUCCGAGGAGGaUGAcGUCg -3'
miRNA:   3'- -GGCuGCuu--GAGGUUCCUUC-GCUuCAG- -5'
1510 3' -50.6 NC_001335.1 + 39309 0.68 0.857438
Target:  5'- -gGACGcGCgugCCGAGGGcGGCGAagaGGUCu -3'
miRNA:   3'- ggCUGCuUGa--GGUUCCU-UCGCU---UCAG- -5'
1510 3' -50.6 NC_001335.1 + 46486 0.68 0.857438
Target:  5'- gCCGugGAAUcggCCGgcgGGGGAGCGuuGGUg -3'
miRNA:   3'- -GGCugCUUGa--GGU---UCCUUCGCu-UCAg -5'
1510 3' -50.6 NC_001335.1 + 20086 0.68 0.838964
Target:  5'- gCUGAUGGuCUUCGAGGAucuucuuGGCGguGUCg -3'
miRNA:   3'- -GGCUGCUuGAGGUUCCU-------UCGCuuCAG- -5'
1510 3' -50.6 NC_001335.1 + 14772 0.68 0.829805
Target:  5'- gCGGCGAACUCCAgccuuguGGGcgugaugccccAGGCGcauGUCg -3'
miRNA:   3'- gGCUGCUUGAGGU-------UCC-----------UUCGCuu-CAG- -5'
1510 3' -50.6 NC_001335.1 + 49413 0.69 0.80204
Target:  5'- gCGugGGACUgCCAAcgcugcGGcGGCGAGGUUu -3'
miRNA:   3'- gGCugCUUGA-GGUU------CCuUCGCUUCAG- -5'
1510 3' -50.6 NC_001335.1 + 32238 0.67 0.892504
Target:  5'- gCCGACGAGCUggCCGAGuucGCGGgccggaacugcuaccGGUCg -3'
miRNA:   3'- -GGCUGCUUGA--GGUUCcuuCGCU---------------UCAG- -5'
1510 3' -50.6 NC_001335.1 + 35197 0.67 0.903943
Target:  5'- gCCGAUG--UUCCGGGGAAG-GAAGg- -3'
miRNA:   3'- -GGCUGCuuGAGGUUCCUUCgCUUCag -5'
1510 3' -50.6 NC_001335.1 + 11698 0.67 0.903943
Target:  5'- aUCGucGCGAuCUUguGGGggGCGAuGGUCu -3'
miRNA:   3'- -GGC--UGCUuGAGguUCCuuCGCU-UCAG- -5'
1510 3' -50.6 NC_001335.1 + 39936 0.66 0.934932
Target:  5'- aCGACGGcCUgCAguGGGAGGCGAu--- -3'
miRNA:   3'- gGCUGCUuGAgGU--UCCUUCGCUucag -5'
1510 3' -50.6 NC_001335.1 + 12146 0.66 0.929317
Target:  5'- gCCGACGAcCgugCCc--GAGGCGAcguGGUCg -3'
miRNA:   3'- -GGCUGCUuGa--GGuucCUUCGCU---UCAG- -5'
1510 3' -50.6 NC_001335.1 + 27885 0.66 0.929317
Target:  5'- aCGGCGAAUgggCguGGuuGAAGCGAacGGUCg -3'
miRNA:   3'- gGCUGCUUGa--GguUC--CUUCGCU--UCAG- -5'
1510 3' -50.6 NC_001335.1 + 6727 0.66 0.923411
Target:  5'- gCCGAUGAugUgaGGGGGAGaCGggG-Ca -3'
miRNA:   3'- -GGCUGCUugAggUUCCUUC-GCuuCaG- -5'
1510 3' -50.6 NC_001335.1 + 7899 0.66 0.917212
Target:  5'- cCCGuCGAAC-CCGAGG--GUGAuccGGUCa -3'
miRNA:   3'- -GGCuGCUUGaGGUUCCuuCGCU---UCAG- -5'
1510 3' -50.6 NC_001335.1 + 9857 0.66 0.917212
Target:  5'- gCCGugGGGCUC--GGGGAGCcugGGAccGUCg -3'
miRNA:   3'- -GGCugCUUGAGguUCCUUCG---CUU--CAG- -5'
1510 3' -50.6 NC_001335.1 + 21955 0.66 0.917212
Target:  5'- gCCGAUGGcCUCUAGuGGGuuGGUGggGUa -3'
miRNA:   3'- -GGCUGCUuGAGGUU-CCU--UCGCuuCAg -5'
1510 3' -50.6 NC_001335.1 + 26242 0.66 0.910722
Target:  5'- gCGgcaGCGGGCUCCAGGccccGAGGCGcGGGUUc -3'
miRNA:   3'- gGC---UGCUUGAGGUUC----CUUCGC-UUCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.